PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0676s0008.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family AP2
Protein Properties Length: 437aa    MW: 47941.6 Da    PI: 6.1933
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0676s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.64.2e-15178237155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+++GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Kalax.0676s0008.1.p 178 SQFRGVTRHRWTGRYEAHLWDnSCRkEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 237
                          789******************655454477446*************************98 PP
2AP248.62e-15280331155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Kalax.0676s0008.1.p 280 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 331
                          78****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.23E-21178245No hitNo description
SuperFamilySSF541711.18E-16178246IPR016177DNA-binding domain
PROSITE profilePS5103218.663179245IPR001471AP2/ERF domain
PfamPF008471.4E-11179237IPR001471AP2/ERF domain
SMARTSM003802.9E-29179251IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-15179246IPR001471AP2/ERF domain
PRINTSPR003672.4E-6180191IPR001471AP2/ERF domain
CDDcd000187.82E-25280341No hitNo description
PfamPF008474.0E-10280331IPR001471AP2/ERF domain
SuperFamilySSF541715.82E-18280341IPR016177DNA-binding domain
PROSITE profilePS5103219.006281339IPR001471AP2/ERF domain
SMARTSM003802.1E-34281345IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.5E-19281340IPR001471AP2/ERF domain
PRINTSPR003672.4E-6321341IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MTDGDGARGA PRLENLLGCR YPSTDSLVEE CKASDEAYQT DLNKPMGGIE LYSNADPCPP  60
RVPEAFGNFG QIGDLFGSYS DGGGDGGNNG YGGVPFDGAT SVSGFKSLMR LNNCSGCFYC  120
EKSDNGVEPS DNLLALCTSN GTSQGSELSD HRKRAVEASA AVEPVPRKNT DTFGQRTSQF  180
RGVTRHRWTG RYEAHLWDNS CRKEGQSRKG RQVYLGGYDK EEKAARAYDL AALKYWGTTT  240
HTNFPLVNYE KEVEEMKNTT RHEYVANLRR KSSGFSRGAS VYRGVTRHHQ HGRWQARIGR  300
VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GTSAVTNFDV SRYDVKRICS SSTLITNDSA  360
KSKDSNPNSP EEDQCENDSS FASSASAKHI IPVPTAPHLS TDLCWTDDCI QSSQLSPIVY  420
LDSYNEFQTA RTGYMD*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022777228.11e-144AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-125AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A061GBL41e-140A0A061GBL4_THECC; AP2 domain-containing transcription factor
TrEMBLA0A1U8B0271e-140A0A1U8B027_NELNU; AP2-like ethylene-responsive transcription factor AIL1
STRINGEOY272401e-141(Theobroma cacao)
STRINGXP_010273924.11e-141(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-118AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]