PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0672s0013.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 337aa    MW: 37985.4 Da    PI: 10.3163
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0672s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.34.9e-31267324359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D ++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYegeHnh+
  Kalax.0672s0013.1.p 267 DDFSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPSMLIVTYEGEHNHP 324
                          99***********************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105337.4E-17218263IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.3E-33253325IPR003657WRKY domain
PROSITE profilePS5081129.631260326IPR003657WRKY domain
SuperFamilySSF1182906.54E-27263325IPR003657WRKY domain
SMARTSM007742.2E-38265325IPR003657WRKY domain
PfamPF031065.8E-27267324IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEEVEEASKA AVESCHRLLG LLSQPQNHAH NRNLMAETEL TVCKFKKVVT LLDRKLGHAR  60
FRKSKNLPTP FPQNVLLEGQ AYRQENNLNL SRMLFREKNP LPEHGSVLKN TTGFVNMPME  120
MSSNVKSPVQ VTVQTVPGYQ FLQQQQIKLQ HQHQQMKQQA EMMYQKSNGG INLNFDSTSC  180
TPTMSSTRSF LSSLSMDGSS FQLIGANRSM DQNSHPHKRK CSSRGDDGSV KCGSSSRCHC  240
SKKRKHRIKR SIKVPAISNK LADIPPDDFS WRKYGQKPIK GSPHPRGYYK CSSMRGCPAR  300
KHVERCLEEP SMLIVTYEGE HNHPRIPAQI SQSANA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-20258328776WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021672672.11e-151probable WRKY transcription factor 21
SwissprotO043361e-110WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A2I4F6N81e-149A0A2I4F6N8_JUGRE; WRKY21
STRINGcassava4.1_011033m1e-146(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.13e-63WRKY DNA-binding protein 21