PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0668s0016.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB_related

Protein Properties

Length: 243aa MW: 27787.2 Da PI: 10.1005

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0668s0016.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.5	3.1e-08	136	183	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E +lvd++ +G g+W+ I r + + Rt+ +++++w+++l Kalax.0668s0016.1.p 136 WTLPEVIKLVDGISHYGVGRWTEIQRLFFpssTYRTPVDLRDKWRNLL 183 9999*********************999**************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-11	125	185	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.604	128	187	IPR017930	Myb domain
SuperFamily	SSF46689	6.58E-16	130	205	IPR009057	Homeodomain-like
SMART	SM00717	2.1E-8	132	185	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-5	136	183	IPR001005	SANT/Myb domain
CDD	cd11660	5.62E-18	136	184	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MRVKGSAESS IHKRLRRPPV RYIDEFSGYV SLSDEKHSAS GTPRNKILNA RTSIEHDNGH 60 KVFRSFKLAR DEGFNGTSSN KSSLTIGHVC GQYKEFSPVT TLDSDEENDL DEPEKVSLAG 120 KGSKNCSDRR KHQMIWTLPE VIKLVDGISH YGVGRWTEIQ RLFFPSSTYR TPVDLRDKWR 180 NLLKASNAWI QNDQEEKDEE SQKNGHRQLP KEILHRISEL GRLYPYPVKR TPTHTPKSSS 240 RK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	8e-23	TRF-like 6

Link Out ? help Back to Top
Phytozome	Kalax.0668s0016.1.p