PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0658s0008.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 212aa MW: 23403.5 Da PI: 7.3673

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0658s0008.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.4	7e-10	43	91	6	55
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + E++RR++++s ++eL +l+P+ +++ + L +A +YIk+Lq Kalax.0658s0008.1.p 43 KTTEKNRRNQMKSLYAELSSLVPHyT--TKADAAALPDKLDEAARYIKKLQ 91 578*******************55..45555666789*********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.705	37	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.0E-11	42	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.3E-5	43	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.88E-10	44	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-6	44	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.66E-7	46	95	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0050832	Biological Process	defense response to fungus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MMYFFVGGHF GFGSSQLGSD CSFLWMDGRN KLPGSSVSST DRKTTEKNRR NQMKSLYAEL 60 SSLVPHYTTK ADAAALPDKL DEAARYIKKL QVSLEKLRQK KEKLQGGSVT GASSAVDGTF 120 GHQNLLFEPQ VDVHRMGSAL EVVLVTGLDH QFALFTSVLR TLHEEGAEVG NASFYVASDK 180 VFHIIHSKVE EGAEECRESK IQERLHSLIL H*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012091614.1	2e-59	uncharacterized protein LOC105649551
TrEMBL	B9RBD1	2e-54	B9RBD1_RICCO; DNA binding protein, putative
STRING	XP_002509465.1	3e-55	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	1e-25	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kalax.0658s0008.1.p