PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

Kalax.0656s0002.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 320aa MW: 35269.4 Da PI: 6.9904

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0656s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.9	5.5e-11	155	202	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka+iL + ++Y++sLq Kalax.0656s0002.1.p 155 SHSLAERVRREKIGERMKLLQSLVPGC----DKIAGKAQILDEIINYVQSLQ 202 8***********************9....899***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.79E-16	149	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.18E-10	149	206	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.8E-16	151	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.44	151	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.5E-8	155	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.7E-10	157	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MSGFSYHHDH SDSSSLQSNN NFVHVPTPFQ QDDTVLWRHS NNECFQDYFP FHQFQSKEAN 60 YGLSAAAAAR HDAEVPSSAI VCGLRASYIA GPNAEMGVAQ TPKRRKNINS KKIPPKQNNE 120 KKSKGGQKEK EQVSGTPPVM EYIHVRARRG QATDSHSLAE RVRREKIGER MKLLQSLVPG 180 CDKIAGKAQI LDEIINYVQS LQTQVQVLVG KMAVLSPYMS DNEANLGAAL PASAESICRL 240 ETSLSSSMMM ESSCNLLNFA DDSHHNSLLS ASSSSSLTSK GDQRNFISQI RLCEMDVQAG 300 HFGAIDDQYW LDHLAQVDQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q93W88	8e-41	BH137_ARATH; Transcription factor bHLH137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	1e-30	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kalax.0656s0002.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]