PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0655s0019.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 222aa MW: 24886.5 Da PI: 4.8015

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0655s0019.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.4	3.4e-10	53	96	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er+RR+r+ +++ Lr+l+P+ + ++Ka+i Av YI +Lq Kalax.0655s0019.1.p 53 LTERNRRQRLSERLLVLRSLVPNI-----TNMNKATIIVDAVSYIEELQ 96 57*******************6.....58***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	6.8E-15	46	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.373	46	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-15	47	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.20E-10	48	97	No hit	No description
SMART	SM00353	2.8E-10	52	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-7	53	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MGMCGLAGQM KHKGVILYEP VKIGESSNEG KSASNEAVGE NGEVRRFKSK NLLTERNRRQ 60 RLSERLLVLR SLVPNITNMN KATIIVDAVS YIEELQRCVE ELTNQLQEME AKVCSDDEER 120 EFQEGETSLM QEIIQTPIQA EVDLTVINHS KLWMKLVFTN RRGGFTQLME ALNYLGLEPT 180 NVSLTTSGGA VLVSLCLEGI YGQDLEVNKI RELLQDIIRN I*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021809344.1	3e-53	transcription factor DYT1-like
TrEMBL	A0A2N9GEL9	1e-52	A0A2N9GEL9_FAGSY; Uncharacterized protein
STRING	XP_008225011.1	2e-52	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21330.1	8e-27	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kalax.0655s0019.1.p