PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

Kalax.0651s0018.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 313aa MW: 33148.4 Da PI: 5.0265

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0651s0018.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33	1.1e-10	161	205	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri ++f L+ l+P++ K + a++L + v+Y+k L Kalax.0651s0018.1.p 161 HSIAERLRRERIAERFKALQALVPTC-----NKTDRAAMLDEIVDYVKFL 205 99*********************8.....6**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.50E-12	154	210	No hit	No description
SuperFamily	SSF47459	3.53E-16	154	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.729	156	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.9E-16	158	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-8	161	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.3E-13	162	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MANDPPEGYG DEFLEQILAI PSYGNHLGET TSSVVFPTGP APGDASGSGE RSSYEGGSVF 60 PLGLSLDSAF PSTIVAASGA GDGSLAAPGR REGQPVQIGS MYPAFGHIQP HSMRVQPGLP 120 QFNQTFSSQQ SSPGLMTPVA PQPPPMCPRV RARRGQATDP HSIAERLRRE RIAERFKALQ 180 ALVPTCNKTD RAAMLDEIVD YVKFLRLQVK VLSMSRLGGA GAVAQLVADA TLPTAGREVS 240 EGGSHQIDED RWSTDDIERE VARLMDENVG AAMQLLQSKS LCIMPISLAA AIFPAHQLEG 300 STEMKSEPNA PS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	165	170	RLRRER

Functional Description ? help Back to Top
Source	Description
UniProt	Required for ovule fertilization. {ECO:0000269\|PubMed:15634699}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002284047.1	1e-120	PREDICTED: transcription factor UNE12
Swissprot	O22768	7e-66	UNE12_ARATH; Transcription factor UNE12
TrEMBL	D7T780	1e-118	D7T780_VITVI; Uncharacterized protein
STRING	VIT_05s0020g04620.t01	1e-119	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02590.3	6e-51	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kalax.0651s0018.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]