PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Binding Motif |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0643s0028.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Trihelix

Protein Properties

Length: 416aa MW: 46554.3 Da PI: 5.4338

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0643s0028.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	81.8	9.5e-26	308	392	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W ++e++aLi++r ++e ++++ k + W+evs+++ g++rs+k+Ckekwen+nk+++++k++ + + +ss+tcpyf++l+ Kalax.0643s0028.1.p 308 KWLRDEIQALIQLRGRLEMNFSSMGFKCTIWDEVSARLLGMGYRRSAKKCKEKWENMNKYFRRVKTNGITK-RNSSKTCPYFQELD 392 7***************************************************************99986.88999*****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.34	301	365	IPR017877	Myb-like domain
SMART	SM00717	6.6E-4	305	367	IPR001005	SANT/Myb domain
CDD	cd12203	7.59E-22	307	372	No hit	No description
Pfam	PF13837	7.0E-20	307	392	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MEVFSGEVRM RASDHFPDQI SPFPSSFDSL FAGSEVTVPS PDITPFPPQK LRPIRCNGKS 60 AADCATDPAA SAFGEFRVAS GQGSLGAGFG EVGFVSDFRN EYVEGAGSVG AGCVGGGDVR 120 PVADARIGKD EFEGQSLPPD SRSESEVSGD LLEHAQGSNN RKSRGRKGKR WEGLMQKFIS 180 KVLVKQEAMH KQIMEAIERN ERERLMREEA WKQQQMEWMK RDEQMRAEET SRNVALISFI 240 QNVIGEDFQL PEPLQMYNLP NDEGEVDHQR DIVCDGADDR LHTSEKDDSP GTKYPPPQEI 300 SLSADNRKWL RDEIQALIQL RGRLEMNFSS MGFKCTIWDE VSARLLGMGY RRSAKKCKEK 360 WENMNKYFRR VKTNGITKRN SSKTCPYFQE LDILCKQGII SPPCNPSDTN CGDLS*

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MEVFSGEVRM RASDHFPDQI SPFPSSFDSL FAGSEVTVPS PDITPFPPQK LRPIRCNGKS  60
AADCATDPAA SAFGEFRVAS GQGSLGAGFG EVGFVSDFRN EYVEGAGSVG AGCVGGGDVR  120
PVADARIGKD EFEGQSLPPD SRSESEVSGD LLEHAQGSNN RKSRGRKGKR WEGLMQKFIS  180
KVLVKQEAMH KQIMEAIERN ERERLMREEA WKQQQMEWMK RDEQMRAEET SRNVALISFI  240
QNVIGEDFQL PEPLQMYNLP NDEGEVDHQR DIVCDGADDR LHTSEKDDSP GTKYPPPQEI  300
SLSADNRKWL RDEIQALIQL RGRLEMNFSS MGFKCTIWDE VSARLLGMGY RRSAKKCKEK  360
WENMNKYFRR VKTNGITKRN SSKTCPYFQE LDILCKQGII SPPCNPSDTN CGDLS*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00552	DAP	Transfer from AT5G47660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47660.1	3e-36	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Kalax.0643s0028.1.p