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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0641s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GATA | ||||||||
Protein Properties | Length: 512aa MW: 56398.7 Da PI: 5.0054 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 41.9 | 1.4e-13 | 7 | 40 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +Cg+ +TplWR+gp ++ LCnaCG ++r kg Kalax.0641s0002.1.p 7 CCHCGVASTPLWRNGPPDKPVLCNACGSRWRTKG 40 99**************55555**********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.6E-7 | 1 | 55 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 6.18E-10 | 5 | 45 | No hit | No description |
CDD | cd00202 | 1.57E-13 | 6 | 54 | No hit | No description |
Pfam | PF00320 | 2.0E-11 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 10.976 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.0E-10 | 7 | 41 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF13919 | 1.5E-6 | 275 | 355 | IPR028020 | ASX homology domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 512 aa Download sequence Send to blast |
MGKQGPCCHC GVASTPLWRN GPPDKPVLCN ACGSRWRTKG NLTNYAPLHS RAEPDNFGDH 60 KELRIKITYG RDKEDICPKR KQTNENAMTG SISSNYNDIF WKAMDDDTSN RSSSGSAISN 120 SESCAQFGTT YFNEFTGPAQ VVMADRTKPA KKRTCIPRPR SSSIAALTKD LCTILHQQQS 180 SGFSVSSEED LLFESDKSIF SAETGHGSYL IRDTSSMTRE EDSEASSFSV NNKPYLGSET 240 SFYPKPLPVH TSSIKGVADD IMSNNPTRHH EKTEERNSEE SEISEILGSQ SSALTTINLK 300 DVFNHEEFLR HLTDEEQGQV LKCLPYVDDS RLSSCLQSLF DSFSTFQKLI TEELFGASLP 360 GITSDDCDTF NRLAFCNLLK SKSVELFNVM KKCKHSAAAT RAYPETKTLM KIPNTAPSPV 420 CKEKTEADDI DNDSACSSQK NLLALPADSN PYMLDPLSYS DENCDQDLLL DMPSSNSFPD 480 AELIFSAPSF GIPHDRLGSC SCSAYPNFIG Q* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011031967.1 | 1e-157 | PREDICTED: GATA transcription factor 26-like | ||||
TrEMBL | A9PFA9 | 1e-155 | A9PFA9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s08080.1 | 1e-156 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.3 | 2e-85 | GATA transcription factor 26 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0641s0002.1.p |