PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Basic Information? help Back to Top

TF ID

Kalax.0636s0022.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HD-ZIP

Protein Properties

Length: 253aa MW: 28281.2 Da PI: 9.2789

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0636s0022.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.5	2.6e-19	115	169	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q ++Lee F+++++++ ++++ LA++l+L+ rqV vWFqNrRa+ k Kalax.0636s0022.1.p 115 RKKLRLKKDQAQVLEERFKQQSTLNPKQKQALARQLNLSPRQVEVWFQNRRARTK 169 6778899**********************************************98 PP
2	HD-ZIP_I/II	118.9	2.7e-38	115	203	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+k+q+++LEe F+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+dye+Lk+++++l+een+rL ke +eL+ + Kalax.0636s0022.1.p 115 RKKLRLKKDQAQVLEERFKQQSTLNPKQKQALARQLNLSPRQVEVWFQNRRARTKLKQTEQDYEYLKKCCESLTEENRRLIKELKELK-A 203 69*************************************************************************************9.4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.8E-18	99	173	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.92E-18	103	172	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.572	111	171	IPR001356	Homeobox domain
SMART	SM00389	2.4E-15	113	175	IPR001356	Homeobox domain
Pfam	PF00046	8.9E-17	115	169	IPR001356	Homeobox domain
CDD	cd00086	5.24E-17	115	172	No hit	No description
PROSITE pattern	PS00027	0	146	169	IPR017970	Homeobox, conserved site
SMART	SM00340	7.6E-19	171	214	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	3.3E-10	171	205	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MDYHGCSNIG LHLKLGSEFA GHPPRTLTHI NLNRKNDHQA LMKPCFELPL LSLGLGHHED 60 GGNQVDQGIV VKPGVKGETS GQSTVSSFSN SGLSVKRERS YEDEDYNCFS NDGVRKKLRL 120 KKDQAQVLEE RFKQQSTLNP KQKQALARQL NLSPRQVEVW FQNRRARTKL KQTEQDYEYL 180 KKCCESLTEE NRRLIKELKE LKALKPAQPN CITLPAATLS ICPSCEGVTT TPARGDCPAK 240 PKFFNTAPSA AY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	163	171	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021631568.1	5e-64	homeobox-leucine zipper protein HAT22-like
Swissprot	P46665	3e-54	HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBL	A0A2C9UQH4	1e-62	A0A2C9UQH4_MANES; Uncharacterized protein
STRING	cassava4.1_013986m	2e-63	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	5e-45	homeobox from Arabidopsis thaliana

Link Out ? help Back to Top
Phytozome	Kalax.0636s0022.1.p