PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0617s0009.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 641aa    MW: 69228.4 Da    PI: 9.6124
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0617s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-057395123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         + C+ C+k F r  nL+ H r H
  Kalax.0617s0009.1.p 73 FICEVCNKGFQREQNLQLHRRGH 95
                         89*******************88 PP
2zf-C2H212.40.0005149171123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC++C+k +  +s+ k H +t+
  Kalax.0617s0009.1.p 149 WKCEKCSKKYAVQSDWKAHSKTC 171
                          58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.3E-67295IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.38E-77295No hitNo description
SMARTSM003550.00527395IPR015880Zinc finger, C2H2-like
PfamPF121713.2E-57395IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.997395IPR007087Zinc finger, C2H2
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
SMARTSM00355130114144IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.0E-5137170IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.38E-7144169No hitNo description
SMARTSM00355140149169IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MSSFFGGARE DDQSHHHLQM LQQQQLQPQQ QQQNSSSLPA PQGKKKRNLP GTPNPDAEVI  60
ALSPKSLMAT NRFICEVCNK GFQREQNLQL HRRGHNLPWK LKQKSNKEVK KKVYLCPEPT  120
CVHHDPSRAL GDLTGIKKHY SRKHGEKKWK CEKCSKKYAV QSDWKAHSKT CGTREYRCDC  180
GTLFSRRDSF ITHRAFCDAL AQESARHPTG LSSIGSHIYG ASASRPSLGL DFQVGTQMPS  240
NNMLRLGNAM GPAKFDHHSL TMPPNNSNPF GQHQQMPSPS SIFMNDPNTN QGGFQEQSHQ  300
QGLMIPNKAL FHGMMNLSDH HDQSPNSASA SSMFNLGFYP NGTPNRSMNN NPSNSSNNNM  360
SSSSGFLSSD DQFNIGISAN NVSGGGGSQP TSTNLFSSTL GNNLSSGNLN SIYGNPSLQH  420
ENLTPHMSAT ALLQKAAQIG STTSASNSST LLRGLAVSSN PAATSDSAQQ LISPAGNISG  480
SNNSSRTAFA PNGGTLKPAL MDNDTHFQGL INSLTNGSSS IFGDQNSYTG FGDADQNNNN  540
MGLDRNLHQQ LNNNASFGSS AEANKMQQNL VRGSDKLTLD FLGVGGIVRN NMNAASAAAA  600
SGFLHREQQQ QQLQQNQQGV DGRSLESARA NLPFGSAKFH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-35145206364Zinc finger protein JACKDAW
5b3h_F5e-35145206364Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022735225.10.0protein indeterminate-domain 5, chloroplastic-like
RefseqXP_022735226.10.0protein indeterminate-domain 5, chloroplastic-like
TrEMBLA0A061EG080.0A0A061EG08_THECC; Indeterminate(ID)-domain 5, putative isoform 2
STRINGEOY011980.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.12e-96indeterminate(ID)-domain 5