PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0608s0012.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 298aa    MW: 33009.1 Da    PI: 9.4577
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0608s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.21.6e-1618109187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                          +W+++ + +L++a  ++  +l+rg+l++++W+ev++++     ++++  r+ +qCk++++ ++k+yk +k++ +  +  ++s++p+fd+l
  Kalax.0608s0012.1.p  18 CWSEEATSTLVDAWGRRYVELSRGNLRQKDWQEVADAVnarhgHSKKTFRTDVQCKNRIDTIKKKYKTEKARVSATNGAVVSSWPFFDRL 107
                          7*************************************988877778889************************99999**********9 PP

             trihelix  86 ea 87 
                          +a
  Kalax.0608s0012.1.p 108 DA 109
                          85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.0E-2616110No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MDESSPPPSR PIPVREDCWS EEATSTLVDA WGRRYVELSR GNLRQKDWQE VADAVNARHG  60
HSKKTFRTDV QCKNRIDTIK KKYKTEKARV SATNGAVVSS WPFFDRLDAL IGPNVKKVGS  120
GGGGGQLVMR IASPPMALPL TAYRKAGQPR TSPPMATVTP VTLPKKRGAA AASMDDSYFR  180
RNYSAVAAAA AAAEVDEQEE EESEERMAEE EDSSRSSGDG EGDGDGIKKL ARAIKRFGEI  240
YARVEGEKQR QMVELEKQRM QFAKELEVQR MQMFMNTQVQ LEKIKRSKGS GSNDLYS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010655525.11e-116PREDICTED: trihelix transcription factor ASIL1 isoform X4
TrEMBLA0A072VEJ21e-113A0A072VEJ2_MEDTR; Putative transcription factor Trihelix family
STRINGVIT_10s0003g01300.t011e-113(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.12e-65sequence-specific DNA binding transcription factors