PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0608s0009.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 285aa MW: 30874.8 Da PI: 9.3929

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0608s0009.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39	1.4e-12	103	150	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+ +ErrRR+riN +++Lr l+P+ s K++Ka+iL +++ ++ L Kalax.0608s0009.1.p 103 KNHSDAERRRRERINAHLATLRGLVPST----SDKMDKAAILAEVITQVRRL 150 58***********************9....8********999766665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.888	100	150	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.9E-14	100	156	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.1E-14	103	156	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-10	103	150	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.31E-11	103	150	No hit	No description
SMART	SM00353	2.0E-11	106	156	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MVKMKTAIIY WSNVLSIFKL LKHTYSLNYI IKTWMEIFCS SLEPPITCGS GFGGGFDQFL 60 LQGYCDQSSK ALVLDCERGE LVKAAGVLGK NGVSPAKSAE ALKNHSDAER RRRERINAHL 120 ATLRGLVPST SDKMDKAAIL AEVITQVRRL KKKAAEAAAG LLIPLDADEV RVQAVEDQAG 180 EGTTLCFKAS ICCGYRPDLL PDLKLALSTL QVSTQQMEMS TLGGRVKNEF VFSALRDGKL 240 AKADEEKAIA ASIHGALSSV LDKAPPLQLY SPQTATQTKK RKLS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	108	113	ERRRRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007025402.1	2e-68	PREDICTED: putative transcription factor bHLH107
TrEMBL	A0A061GLQ3	4e-67	A0A061GLQ3_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 2
STRING	XP_009348588.1	2e-65	(Pyrus x bretschneideri)
STRING	XP_004295576.1	6e-65	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40200.1	1e-29	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kalax.0608s0009.1.p