PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0578s0015.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 362aa    MW: 39327.9 Da    PI: 7.9485
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0578s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.14.1e-13120164347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE+ l++ + ++lG+g+W+ Iar    +Rt+ q+ s+ qky
  Kalax.0578s0015.1.p 120 PWTEEEHRLFLIGLHKLGKGDWRGIARNYVITRTPTQVASHAQKY 164
                          8*****************************89************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.434113169IPR017930Myb domain
SuperFamilySSF466891.2E-16115170IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-17116168IPR006447Myb domain, plants
SMARTSM007171.4E-10117167IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-10117163IPR009057Homeodomain-like
CDDcd001672.46E-9120165No hitNo description
PfamPF002499.7E-12120164IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MTRRCSHCSF DGHNSRTCPS RAASSSSSAA ISGSASCGGG GVKLFGVRLT DGSIMKKSAS  60
MGNLSSLAHY NSSPSTAAAS PNPSSPSSDT IGNALPAPDG CLSDDPAHVN RRSDRKKGTP  120
WTEEEHRLFL IGLHKLGKGD WRGIARNYVI TRTPTQVASH AQKYFIRQSN ASRRKRRTSL  180
FDMTPEMETE MPPAPERFLL PPPSSEIDHE NSVSLTNQNP ELQSMELTPE ETVKESDDTS  240
IEEANYFLPA PVVPTFYPAY VPVPFRFWSP NLAPTEEEYP ETSNHQVLKP IPVIPKDPIN  300
VNDLVGMSQL SIKETVKTRA DSHPLSMRLL GSPSRQSAFR PRRSASVPNL TQGSADSNPG  360
E*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021889228.11e-129transcription factor MYBS3
TrEMBLA0A1Q3B0D81e-126A0A1Q3B0D8_CEPFO; Myb_DNA-binding domain-containing protein
STRINGevm.model.supercontig_2092.11e-128(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.11e-73MYB_related family protein