PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0564s0015.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 433aa    MW: 47301.5 Da    PI: 6.6
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0564s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH322.2e-10272320355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  Kalax.0564s0015.1.p 272 NSHSLAERVRREKISERMKLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 320
                          58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.06E-11267324No hitNo description
SuperFamilySSF474595.5E-17267336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.586269319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-17270337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-7272320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10275325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MGGDADDGKV DLGFQHNSNK STMSCSTSGM NKNPLPNKVS GIAMSSIPMF KSSAGSDPHF  60
GTHWDPLLAI HQNENFGGGS SMVSHCGYAN PPYPIDNQGM SGTHLLQYPS SDSTLVDLPK  120
IQRFGSGNFV DMAGLYGLPA LGATVSSSCY HNYLSNHEVG IHRHSTDRAG SQDDCQVSEE  180
RALEASPSGK RRRSVESASA LNSNKMTEGE QQKDMSEGSF DQPSEQDDEK QNQIRRLQNK  240
QSGKQAKDNS QTEDGTKDTY IHVRARRGQA TNSHSLAERV RREKISERMK LLQELVPGCN  300
KITGKAVMLD EIINYVQSLQ QQVEFLSMKL ATVNPELNID LERMLSKDIL HSHGDNPVML  360
GISPGIRSSH PYPHAMLQSG MQGIPNSSAQ YHHMPQNAWN NEFQSLLQMG FSSNPAVDNL  420
GQDGCGKPSL RD*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020410190.11e-163transcription factor bHLH74 isoform X2
TrEMBLA0A251RBG41e-162A0A251RBG4_PRUPE; Uncharacterized protein
STRINGXP_008220406.11e-160(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.13e-82bHLH family protein