PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

WRKY

Protein Properties

Length: 374aa MW: 40433.1 Da PI: 6.8461

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0554s0031.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	108.9	2.4e-34	202	259	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp++v++tYeg+Hnh+ Kalax.0554s0031.1.p 202 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDPSIVITTYEGQHNHP 259 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.7E-36	186	261	IPR003657	WRKY domain
SuperFamily	SSF118290	6.15E-30	193	261	IPR003657	WRKY domain
PROSITE profile	PS50811	32.833	196	261	IPR003657	WRKY domain
SMART	SM00774	1.8E-40	201	260	IPR003657	WRKY domain
Pfam	PF03106	1.0E-26	202	259	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MSDHQPTDFF NFHDPFVTYQ YSNLLGQAGA TTAPTSAASS SLYDNSSYNS GITTGMSFSE 60 SLDGSVDYNT LARAFGLSSS SSEELFSSVV NEGLGYGKAQ GDQMLQGDGN NGQIGAIGGS 120 SGGGEVVLAS PGPNSSISSS SGEASGREED CSKEHKVAKG SHEDEDGDSS KKQSKQSNKK 180 GEKRQREPRF AFMTKSEVDH LEDGYRWRKY GQKAVKNSPY PRSYYRCTTQ KCNVKKRVER 240 SFQDPSIVIT TYEGQHNHPI PTTLRGSYNT PSLMFSPPSS LSPAAFNLAG GAQGSGFINP 300 HDLLLRMPHW HNNNLIHGMG YNNGGIPPSS TPTSLHQRLQ QRSQQPQVQA DYGLLQDLVN 360 PIGSFGDHKQ EQP*

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MSDHQPTDFF NFHDPFVTYQ YSNLLGQAGA TTAPTSAASS SLYDNSSYNS GITTGMSFSE  60
SLDGSVDYNT LARAFGLSSS SSEELFSSVV NEGLGYGKAQ GDQMLQGDGN NGQIGAIGGS  120
SGGGEVVLAS PGPNSSISSS SGEASGREED CSKEHKVAKG SHEDEDGDSS KKQSKQSNKK  180
GEKRQREPRF AFMTKSEVDH LEDGYRWRKY GQKAVKNSPY PRSYYRCTTQ KCNVKKRVER  240
SFQDPSIVIT TYEGQHNHPI PTTLRGSYNT PSLMFSPPSS LSPAAFNLAG GAQGSGFINP  300
HDLLLRMPHW HNNNLIHGMG YNNGGIPPSS TPTSLHQRLQ QRSQQPQVQA DYGLLQDLVN  360
PIGSFGDHKQ EQP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	7e-29	192	261	8	77	Probable WRKY transcription factor 4
2lex_A	7e-29	192	261	8	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009353824.1	9e-83	PREDICTED: probable WRKY transcription factor 71
Refseq	XP_009360850.1	9e-83	PREDICTED: probable WRKY transcription factor 71
Swissprot	Q8VWJ2	2e-57	WRK28_ARATH; WRKY transcription factor 28
TrEMBL	A0A2P2QM74	4e-76	A0A2P2QM74_RHIMU; WRKY transcription factor
STRING	XP_009353824.1	3e-82	(Pyrus x bretschneideri)
STRING	XP_009360850.1	3e-82	(Pyrus x bretschneideri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18170.1	8e-53	WRKY DNA-binding protein 28

Link Out ? help Back to Top
Phytozome	Kalax.0554s0031.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kim SH, et al. Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis. Mol. Cells, 2014. 37(11): p. 833-40 [PMID:25358503] Zhao L, et al. KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535 [PMID:29288215]