PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0545s0034.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 228aa    MW: 24960.3 Da    PI: 8.8241
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0545s0034.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000184264123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ Cgk F++   L  H  +H
  Kalax.0545s0034.1.p 42 FECKTCGKKFPTFQALGGHRASH 64
                         89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.76E-941113No hitNo description
PROSITE profilePS5015710.6374269IPR007087Zinc finger, C2H2
PfamPF139121.2E-114266IPR007087Zinc finger, C2H2
SMARTSM003550.074264IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
PfamPF139121.3E-991115IPR007087Zinc finger, C2H2
SMARTSM003551.191113IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.07891118IPR007087Zinc finger, C2H2
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009408Biological Processresponse to heat
GO:0009611Biological Processresponse to wounding
GO:0009631Biological Processcold acclimation
GO:0009643Biological Processphotosynthetic acclimation
GO:0010200Biological Processresponse to chitin
GO:0010224Biological Processresponse to UV-B
GO:0042538Biological Processhyperosmotic salinity response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MSLSNHETSS TLTEETAASC LMLLSKVGQY SQTPKDENNR EFECKTCGKK FPTFQALGGH  60
RASHKKPRLE SDSSQLTKQS VMTTPAKPKS HECAICGAEF ALGQALGGHM RRHRDAAGVN  120
GVVFGSKMGE TPSGATTAVQ ASEIPAVLKR WKSKRVCLEL DLNLTPREND LQMESSDSEV  180
GSDLKLQLGK REYEVRAEVG RLQEYDLRMQ IGKRRRFGDG FLGLVAL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024991277.12e-45zinc finger protein ZAT11-like
RefseqXP_027352863.12e-45zinc finger protein ZAT11-like
TrEMBLA0A103Y9E45e-44A0A103Y9E4_CYNCS; Zinc finger, C2H2
STRINGVIT_06s0004g04180.t011e-43(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.14e-35C2H2 family protein