PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0544s0038.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 219aa    MW: 24750.6 Da    PI: 4.764
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0544s0038.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.45.7e-192072456
                         -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                         + +f+++q++ Le+ Fe + ++   ++ +LA++lgL+ rqV +WFqN+Ra++k
  Kalax.0544s0038.1.p 20 KSRFSDKQVKLLEAIFEAETKIEPLKKMQLARELGLEPRQVAIWFQNKRARWK 72
                         578*************************************************9 PP
2HD-ZIP_I/II114.37.3e-3719110293
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                           k r+s++qvklLE  Fe+e+k+ep +K++lareLgl+prqva+WFqn+RAR+k+kqlEk+y+aL+++yd+l+ + e+L++e+++L ++l
  Kalax.0544s0038.1.p  19 SKSRFSDKQVKLLEAIFEAETKIEPLKKMQLARELGLEPRQVAIWFQNKRARWKSKQLEKEYRALRARYDNLAFRFESLKEEKQSLFAQL 108
                          699***********************************************************************************9999 PP

          HD-ZIP_I/II  92 ke 93 
                          ++
  Kalax.0544s0038.1.p 109 EN 110
                          75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.14E-18576IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-191180IPR009057Homeodomain-like
SMARTSM003896.6E-151378IPR001356Homeobox domain
CDDcd000861.21E-151375No hitNo description
PROSITE profilePS5007117.411474IPR001356Homeobox domain
PfamPF000462.2E-162072IPR001356Homeobox domain
PRINTSPR000316.8E-64554IPR000047Helix-turn-helix motif
PROSITE patternPS0002704972IPR017970Homeobox, conserved site
PRINTSPR000316.8E-65470IPR000047Helix-turn-helix motif
PfamPF021839.7E-1374110IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MSFENGDSGS PPRRKRGESK SRFSDKQVKL LEAIFEAETK IEPLKKMQLA RELGLEPRQV  60
AIWFQNKRAR WKSKQLEKEY RALRARYDNL AFRFESLKEE KQSLFAQLEN MNLAMGKLGE  120
RGVSTRLSPG EESENGGANC EYVEVIHQPE MYVRPDGVAY GGSGLDYVAA QDYAGNMDEL  180
GDSSQASTDQ EWCGADVDAA RAFELPCGEA QWWECWNC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.14e-44homeobox 7