PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

Kalax.0503s0029.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

TALE

Protein Properties

Length: 294aa MW: 33124.3 Da PI: 6.7965

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0503s0029.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	15	4.2e-05	246	275	25	54
--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 25 psaeereeLAkklgLterqVkvWFqNrRak 54 ++++++++L +++gL+ +q+ +WF N+R + Kalax.0503s0029.1.p 246 LQEDDKAKLVEETGLQLKQINNWFINQRKR 275 6788999*********************87 PP
2	ELK	25.5	3e-09	178	199	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L++++++++ ++++E++ Kalax.0503s0029.1.p 178 ELKIELKQGFKSRIEDVREEIL 199 9*******************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	1.8E-14	19	63	IPR005540	KNOX1
Pfam	PF03790	4.9E-14	21	62	IPR005540	KNOX1
SMART	SM01256	1.6E-5	76	120	IPR005541	KNOX2
PROSITE profile	PS51213	9.132	178	198	IPR005539	ELK domain
SMART	SM00389	4.1E-5	200	283	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.2E-8	201	284	IPR009057	Homeodomain-like
CDD	cd00086	8.02E-9	201	278	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.8E-23	205	279	IPR009057	Homeodomain-like
PROSITE profile	PS50071	8.843	244	279	IPR001356	Homeobox domain
Pfam	PF05920	2.9E-10	248	275	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MIGSSGLAGE ASSSFLSVDR LKAEIASHPL YQQLLSAHVD CLYVATPTHH RPMIDAQLAN 60 SHNLGLLTSC ASAAHHSLSS HDRHDLDTFM DQLETHVKVD ALEAVMACRA IENAFQALTG 120 VTLGAASGAT MSDEEDEDED LELHHHHHHH HHSSNDMIMG FGLPTESERT LMERVRQELK 180 IELKQGFKSR IEDVREEILR KRRAGKLPSD TTSVLKNWWQ QHSKWPYPTV SCPCDVVIIT 240 EGVKWLQEDD KAKLVEETGL QLKQINNWFI NQRKRNWHVA SQSVTSLKSK RKR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	272	292	RKRNWHVASQSVTSLKSKRKR

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in secondary cell wall biosynthesis. {ECO:0000269\|PubMed:15980264}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022738794.1	1e-125	homeobox protein knotted-1-like 7
Swissprot	Q9FPQ8	1e-112	KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBL	A0A371IAJ7	1e-123	A0A371IAJ7_MUCPR; Homeobox protein knotted-1-like 7 (Fragment)
STRING	Gorai.003G163800.1	1e-121	(Gossypium raimondii)
STRING	Gorai.004G206600.1	1e-121	(Gossypium raimondii)
STRING	EOY24590	1e-122	(Theobroma cacao)
STRING	GLYMA11G02960.1	1e-122	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62990.1	1e-106	KNOTTED-like homeobox of Arabidopsis thaliana 7

Link Out ? help Back to Top
Phytozome	Kalax.0503s0029.1.p

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He JB, et al. KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis. J Integr Plant Biol, 2018. 60(6): p. 514-528 [PMID:29393579]