PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0502s0034.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 252aa MW: 28018.9 Da PI: 9.4471 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.6 | 2.5e-19 | 113 | 167 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q ++Lee F+++++++ ++++ LA++l+L+ rqV vWFqNrRa+ k Kalax.0502s0034.1.p 113 RKKLRLKKDQAQVLEERFKQQSTLNPKQKQALARQLNLSPRQVEVWFQNRRARTK 167 6778899**********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 116.5 | 1.6e-37 | 113 | 203 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+k+q+++LEe F+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E dye+Lk+++++l+een+rL ke +eL+ + Kalax.0502s0034.1.p 113 RKKLRLKKDQAQVLEERFKQQSTLNPKQKQALARQLNLSPRQVEVWFQNRRARTKLKQTELDYEYLKKCCETLTEENRRLIKELKELK-A 201 69*************************************************************************************9.6 PP HD-ZIP_I/II 91 lk 92 lk Kalax.0502s0034.1.p 202 LK 203 65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.13E-18 | 98 | 170 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.2E-18 | 99 | 170 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.572 | 109 | 169 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.3E-15 | 111 | 173 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 8.9E-17 | 113 | 167 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.12E-16 | 113 | 170 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 144 | 167 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 7.2E-19 | 169 | 212 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 1.1E-8 | 169 | 204 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MDHHGRGDLG LNLKLGSELV DHRPRSITHV KRNYQTAMRP CFELPLLSLG LGLDGGGGQV 60 DQGAVVKPGV KGLDGETSGQ STVSSFSNSG LSVMRERSYE DEDYNCFSND GVRKKLRLKK 120 DQAQVLEERF KQQSTLNPKQ KQALARQLNL SPRQVEVWFQ NRRARTKLKQ TELDYEYLKK 180 CCETLTEENR RLIKELKELK ALKQAQPNCV KLPAATLSIC PSCECVTTTP ARGGDCPSKS 240 KFFNSAPSAA Y* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 161 | 169 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002271511.2 | 2e-62 | PREDICTED: homeobox-leucine zipper protein HAT22 isoform X2 | ||||
Refseq | XP_018860369.1 | 1e-62 | PREDICTED: homeobox-leucine zipper protein HAT22-like | ||||
Swissprot | P46665 | 3e-54 | HAT14_ARATH; Homeobox-leucine zipper protein HAT14 | ||||
TrEMBL | A0A1R3GED2 | 2e-61 | A0A1R3GED2_COCAP; Uncharacterized protein | ||||
STRING | VIT_00s0732g00010.t01 | 6e-62 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 1e-44 | homeobox from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0502s0034.1.p |