PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0496s0011.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 296aa    MW: 33148.9 Da    PI: 8.1619
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0496s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.18.6e-20143197256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ +++k+q  +Le+ F+++++++ +++  LAk+lgLt rqV vWFqNrRa+ k
  Kalax.0496s0011.1.p 143 RKKLRLSKDQSAILEDKFKEHNTLNPKQKMALAKQLGLTPRQVEVWFQNRRARTK 197
                          788899***********************************************98 PP
2HD-ZIP_I/II128.62.6e-41143232191
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rlsk+q+++LE++F+e+++L+p++K++la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL+kev+eLr +
  Kalax.0496s0011.1.p 143 RKKLRLSKDQSAILEDKFKEHNTLNPKQKMALAKQLGLTPRQVEVWFQNRRARTKLKQTEVDCEFLKTCCENLTEENRRLQKEVQELR-A 231
                          69*************************************************************************************9.5 PP

          HD-ZIP_I/II  91 l 91 
                          l
  Kalax.0496s0011.1.p 232 L 232
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.1E-232119IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466891.96E-19134200IPR009057Homeodomain-like
PROSITE profilePS5007117.815139199IPR001356Homeobox domain
SMARTSM003896.9E-18141203IPR001356Homeobox domain
PfamPF000465.0E-17143197IPR001356Homeobox domain
CDDcd000867.13E-17143200No hitNo description
Gene3DG3DSA:1.10.10.603.0E-19143197IPR009057Homeodomain-like
PRINTSPR000314.3E-6170179IPR000047Helix-turn-helix motif
PROSITE patternPS000270174197IPR017970Homeobox, conserved site
PRINTSPR000314.3E-6179195IPR000047Helix-turn-helix motif
PfamPF021835.3E-11199233IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.5E-25199242IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MMVDQEADLG LSLSLNLTHN INTHKQQHQN QLPSQKQAHQ FHNVNLFHSF FNSAVQHRAS  60
WNPFSSDQTL IMRSGEMRTS PRGIDVNRLP SSEDYTEDAG ASSPNSAISS LSGKRSERDE  120
NNADHLDRAA CSGSDEEDGD NSRKKLRLSK DQSAILEDKF KEHNTLNPKQ KMALAKQLGL  180
TPRQVEVWFQ NRRARTKLKQ TEVDCEFLKT CCENLTEENR RLQKEVQELR ALKLSPQLYM  240
PMAPPTTLTI CPSCELVGAP RAEGRSQSHQ AGAGFSNNNP WAGAGRPFDA IRPRS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141147SRKKLRL
2191199RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the negative regulation of cell elongation and specific cell proliferation processes such as lateral root formation and secondary growth of the vascular system. Acts as mediator of the red/far-red light effects on leaf cell expansion in the shading response. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. Negatively regulates its own expression. {ECO:0000269|PubMed:10477292, ECO:0000269|PubMed:11260495, ECO:0000269|PubMed:8449400}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Rapidly and strongly induced by lowering the ratio of red to far-red light. {ECO:0000269|PubMed:8106086}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021639155.11e-110homeobox-leucine zipper protein HAT4-like
SwissprotQ054663e-91HAT4_ARATH; Homeobox-leucine zipper protein HAT4
TrEMBLA0A2N9F0H61e-110A0A2N9F0H6_FAGSY; Uncharacterized protein
STRINGVIT_00s0299g00100.t011e-109(Vitis vinifera)
STRINGPOPTR_0001s15490.11e-109(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.16e-91homeobox protein 2
Publications ? help Back to Top
  1. Carabelli M,Turchi L,Ruzza V,Morelli G,Ruberti I
    Homeodomain-Leucine Zipper II family of transcription factors to the limelight: central regulators of plant development.
    Plant Signal Behav, 2014.
    [PMID:23838958]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Francisco M, et al.
    Genome Wide Association Mapping in Arabidopsis thaliana Identifies Novel Genes Involved in Linking Allyl Glucosinolate to Altered Biomass and Defense.
    Front Plant Sci, 2016. 7: p. 1010
    [PMID:27462337]
  4. Müller-Moulé P, et al.
    YUCCA auxin biosynthetic genes are required for Arabidopsis shade avoidance.
    PeerJ, 2016. 4: p. e2574
    [PMID:27761349]
  5. Ivarson E, et al.
    Effects of Overexpression of WRI1 and Hemoglobin Genes on the Seed Oil Content of Lepidium campestre.
    Front Plant Sci, 2016. 7: p. 2032
    [PMID:28119714]
  6. Kasulin L, et al.
    A single haplotype hyposensitive to light and requiring strong vernalization dominates Arabidopsis thaliana populations in Patagonia, Argentina.
    Mol. Ecol., 2017. 26(13): p. 3389-3404
    [PMID:28316114]
  7. Singh M,Gupta A,Singh D,Khurana JP,Laxmi A
    Arabidopsis RSS1 Mediates Cross-Talk Between Glucose and Light Signaling During Hypocotyl Elongation Growth.
    Sci Rep, 2017. 7(1): p. 16101
    [PMID:29170398]