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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Kalax.0496s0011.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 296aa MW: 33148.9 Da PI: 8.1619 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Kalax.0496s0011.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 62.1 | 8.6e-20 | 143 | 197 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++k+q +Le+ F+++++++ +++ LAk+lgLt rqV vWFqNrRa+ k
Kalax.0496s0011.1.p 143 RKKLRLSKDQSAILEDKFKEHNTLNPKQKMALAKQLGLTPRQVEVWFQNRRARTK 197
788899***********************************************98 PP
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| 2 | HD-ZIP_I/II | 128.6 | 2.6e-41 | 143 | 232 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
+kk+rlsk+q+++LE++F+e+++L+p++K++la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL+kev+eLr +
Kalax.0496s0011.1.p 143 RKKLRLSKDQSAILEDKFKEHNTLNPKQKMALAKQLGLTPRQVEVWFQNRRARTKLKQTEVDCEFLKTCCENLTEENRRLQKEVQELR-A 231
69*************************************************************************************9.5 PP
HD-ZIP_I/II 91 l 91
l
Kalax.0496s0011.1.p 232 L 232
5 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 296 aa
Download sequence Send
to blast |
MMVDQEADLG LSLSLNLTHN INTHKQQHQN QLPSQKQAHQ FHNVNLFHSF FNSAVQHRAS 60
WNPFSSDQTL IMRSGEMRTS PRGIDVNRLP SSEDYTEDAG ASSPNSAISS LSGKRSERDE 120
NNADHLDRAA CSGSDEEDGD NSRKKLRLSK DQSAILEDKF KEHNTLNPKQ KMALAKQLGL 180
TPRQVEVWFQ NRRARTKLKQ TEVDCEFLKT CCENLTEENR RLQKEVQELR ALKLSPQLYM 240
PMAPPTTLTI CPSCELVGAP RAEGRSQSHQ AGAGFSNNNP WAGAGRPFDA IRPRS*
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| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 141 | 147 | SRKKLRL |
| 2 | 191 | 199 | RRARTKLKQ |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in the negative regulation of cell elongation and specific cell proliferation processes such as lateral root formation and secondary growth of the vascular system. Acts as mediator of the red/far-red light effects on leaf cell expansion in the shading response. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. Negatively regulates its own expression. {ECO:0000269|PubMed:10477292, ECO:0000269|PubMed:11260495, ECO:0000269|PubMed:8449400}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Rapidly and strongly induced by lowering the ratio of red to far-red light. {ECO:0000269|PubMed:8106086}. |
| Publications
? help Back to Top |
- Carabelli M,Turchi L,Ruzza V,Morelli G,Ruberti I
Homeodomain-Leucine Zipper II family of transcription factors to the limelight: central regulators of plant development.
Plant Signal Behav, 2014.
[PMID:23838958] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Francisco M, et al.
Genome Wide Association Mapping in Arabidopsis thaliana Identifies Novel Genes Involved in Linking Allyl Glucosinolate to Altered Biomass and Defense.
Front Plant Sci, 2016. 7: p. 1010
[PMID:27462337] - Müller-Moulé P, et al.
YUCCA auxin biosynthetic genes are required for Arabidopsis shade avoidance.
PeerJ, 2016. 4: p. e2574
[PMID:27761349] - Ivarson E, et al.
Effects of Overexpression of WRI1 and Hemoglobin Genes on the Seed Oil Content of Lepidium campestre.
Front Plant Sci, 2016. 7: p. 2032
[PMID:28119714] - Kasulin L, et al.
A single haplotype hyposensitive to light and requiring strong vernalization dominates Arabidopsis thaliana populations in Patagonia, Argentina.
Mol. Ecol., 2017. 26(13): p. 3389-3404
[PMID:28316114] - Singh M,Gupta A,Singh D,Khurana JP,Laxmi A
Arabidopsis RSS1 Mediates Cross-Talk Between Glucose and Light Signaling During Hypocotyl Elongation Growth.
Sci Rep, 2017. 7(1): p. 16101
[PMID:29170398]
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