PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0495s0020.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 532aa    MW: 58410.8 Da    PI: 8.0745
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0495s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.76.4e-16337383455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  Kalax.0495s0020.1.p 337 VHNLSERRRRDRINEKMKALQELIPHS-----NKSDKASMLDEAIEYLKCLQ 383
                          6*************************7.....59****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.71E-20330400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-19331392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.574333382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.81E-16336387No hitNo description
PfamPF000102.1E-13337383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-17339388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MNHCIPDWNF EDCLPAANQM KHIGPDHELM ELLWRNGQVV MHSQTHRKSG STAPNDPMAA  60
QKHDQSSFKG CESCWNPSNL IQDDEPVSWL QYPLDDPLEK ESGSNLFIEL ADQVEANKHV  120
KQFENDNIYS KLNPFEANNG MPSVHQQPVV KHSAGPAMAT IPMAPRKIPM LSVPLSNPST  180
LNHTQHVNAG SSEVHFVAKR TDNIAHGGIR EGSTMTVGSS HCGSNLIANE VSRTSRNGVS  240
NKNISPTVFK NSSDRKNFPP KAKGQLDSPD PTMSSSSGGS GSSFMLSAGT TTNSHKRKAS  300
NIEDYECQSD VAELESASAK KQSQRSGSSR KTRAAEVHNL SERRRRDRIN EKMKALQELI  360
PHSNKSDKAS MLDEAIEYLK CLQLQLQMMW MSSGMQPMMY PAVQHYMSRM GIGMGPTMPS  420
MHNAMQLPRV PLLEQPMSGT TTPNQVNVCP TPVLTPLRYQ NQLQNSTLAE QYARYLGFQQ  480
MQAASQPVNM FNFGGAQAFP SNHTIPLPGA GNAPPIAGAT MHDSLRGKLT N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1341346ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024184315.11e-159transcription factor PIF4-like
RefseqXP_024184316.11e-159transcription factor PIF4-like
RefseqXP_024184317.11e-159transcription factor PIF4-like
TrEMBLA0A2P6S0J71e-158A0A2P6S0J7_ROSCH; Putative transcription factor bHLH family
STRINGXP_004303901.11e-152(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.24e-46phytochrome interacting factor 4