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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0472s0019.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB_related | ||||||||
Protein Properties | Length: 112aa MW: 12604.1 Da PI: 4.0146 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.7 | 2.3e-07 | 18 | 50 | 11 | 45 |
HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 l+d+ +q + + W++Ia ++g g+++k++ ++++ Kalax.0472s0019.1.p 18 ALLDVNEQVPDR-WEKIATMVG-GKSAKEVEEHYN 50 577777888878.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.121 | 1 | 53 | IPR017877 | Myb-like domain |
CDD | cd00167 | 1.84E-5 | 6 | 53 | No hit | No description |
SuperFamily | SSF46689 | 1.94E-9 | 6 | 58 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.0E-5 | 17 | 54 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.2E-6 | 17 | 51 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 112 aa Download sequence Send to blast |
TLKYEAWSWE KNKKFELALL DVNEQVPDRW EKIATMVGGK SAKEVEEHYN ALVQDVKIIE 60 FDAYIDDYDE SNALAEPQSI QQLATTLPLG LCLNVENEAS FQELLTPLNS G* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18328.1 | 1e-14 | RAD-like 4 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0472s0019.1.p |