PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0472s0001.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 413aa    MW: 46882.9 Da    PI: 6.0947
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0472s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37e-08325372448
                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                          WT  E  +lvd++  +G g+W+ I r +    + Rt+ +++++w+++l
  Kalax.0472s0001.1.p 325 WTLPEVIKLVDGISHYGVGRWTEIQRLFFptsTYRTPVDLRDKWRNLL 372
                          9999***********************999****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-11314374IPR009057Homeodomain-like
PROSITE profilePS512949.604317376IPR017930Myb domain
SuperFamilySSF466892.54E-15319385IPR009057Homeodomain-like
SMARTSM007172.5E-8321374IPR001005SANT/Myb domain
CDDcd116608.19E-18325373No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MQCFMGKDVQ HRTRVRDVEE EEETEVDHLL AEPRNDRVSV DDCFRVDNKS RDVDISGHEL  60
YTCEEGDNYE KDQLSDIGLD DKRSASIGPS TACEDYLLDT EFVHKDSDCE DFSREGMSFE  120
KSSVETHSSG YSGSESSALG ASESSSTSSG KPRIRNGNDH DKLCKLHVVS QRKCGCQNQI  180
KEKTELKTPI LYTSQNRRNI HKRLRRPPVR YIDEFSGYVS LSDEKHSASG TPRNKILNAR  240
TSIEHDNGHK VFRSFKLARD EGFNGTSSNK SSLTIGHVCG QYKEFSPVTT LDSDEENDLD  300
EPEKVSLAGK GSKNCSDRRK HQMIWTLPEV IKLVDGISHY GVGRWTEIQR LFFPTSTYRT  360
PVDLRDKWRN LLKASNAWIQ NDQEVSHCSH SMNLLLFTFV MIDSDRVSDM KC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.28e-20TRF-like 6