 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Kalax.0462s0007.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
| Family |
MYB |
| Protein Properties |
Length: 293aa MW: 33467.3 Da PI: 5.2092 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Kalax.0462s0007.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 53.6 | 5e-17 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+W+++Ede+l+ ++ ++G +W++ ar g++Rt+k+c++rw+++l
Kalax.0462s0007.1.p 8 KGPWSEQEDEQLLSYISKYGHAHWEAMARQAGLNRTGKSCRLRWLNHL 55
79********************************************97 PP
|
| 2 | Myb_DNA-binding | 45.8 | 1.4e-14 | 61 | 104 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg+ T +E++++++++ ++G++ W++Ia++++ gR+++++k++w++
Kalax.0462s0007.1.p 61 RGNITLQEQLIILQLHSRWGNR-WAKIAECLP-GRSDNEIKNYWRT 104
7899******************.*********.***********96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 293 aa
Download sequence Send
to blast |
MATGGVKKGP WSEQEDEQLL SYISKYGHAH WEAMARQAGL NRTGKSCRLR WLNHLRPGVR 60
RGNITLQEQL IILQLHSRWG NRWAKIAECL PGRSDNEIKN YWRTRVQKQA KQLRCDVNSH 120
QFTEMVQHTW MPQLSERVQT QCKSSPTITQ ELECCEPSSI SCDKLSNDSA IIHSDAAPLS 180
IPCQLSDPSS SHAYNNDSDR HVSDAADSDT AWRLSAGVDA DTCQMNVEKE TISCEDYCPW 240
SEQGLLEVDK KQELLETAAW YDHDYCYSLE NLLNDDDMMI LCQQFLFDDH RA*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1gv2_A | 1e-26 | 8 | 110 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
| 1h88_C | 3e-26 | 8 | 110 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
| 1h89_C | 3e-26 | 8 | 110 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
| 1h8a_C | 2e-26 | 6 | 110 | 25 | 128 | MYB TRANSFORMING PROTEIN |
| 1mse_C | 1e-26 | 8 | 110 | 4 | 105 | C-Myb DNA-Binding Domain |
| 1msf_C | 1e-26 | 8 | 110 | 4 | 105 | C-Myb DNA-Binding Domain |
