PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0456s0006.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 250aa    MW: 28466.1 Da    PI: 9.6554
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0456s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.13.7e-313079150
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fss+g+lyey+
  Kalax.0456s0006.1.p 30 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYA 79
                         79***********************************************8 PP
2K-box106.14.3e-35971934100
                K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                          ss+  + e++++ +qqe++kL k+i+++q+ +Rh++Ge L++L++keL++Le++Lek+l+++RskKn+ll++ ie +qk+e elq++n++
  Kalax.0456s0006.1.p  97 SSNPGTVETNTQFYQQEASKLGKQIREMQNANRHIQGEALGNLTVKELKNLESRLEKGLSRVRSKKNDLLFADIEFMQKREMELQNANMY 186
                          444458899********************************************************************************* PP

                K-box  94 Lrkklee 100
                          Lr+k++e
  Kalax.0456s0006.1.p 187 LRAKIAE 193
                          ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.9E-402281IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.1932282IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-3323111IPR002100Transcription factor, MADS-box
CDDcd002651.52E-452399No hitNo description
PROSITE patternPS0035002478IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-332444IPR002100Transcription factor, MADS-box
PfamPF003191.0E-263178IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-334459IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-335980IPR002100Transcription factor, MADS-box
PfamPF014861.5E-26105191IPR002487Transcription factor, K-box
PROSITE profilePS5129714.666107197IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MEFPNFQHNQ SSEGSSSLRK LAGRGKIEIK RIENTTNRQV TFCKRRNGLL KKAYELSVLC  60
DAEVALVVFS SRGRLYEYAN NSVRSTIERY KKASSDSSNP GTVETNTQFY QQEASKLGKQ  120
IREMQNANRH IQGEALGNLT VKELKNLESR LEKGLSRVRS KKNDLLFADI EFMQKREMEL  180
QNANMYLRAK IAECERQQQT STVAGETIYE TQQSNRNFLP VNLMEPDNSY TSQDQTALQL  240
VINHAALNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-2123107282Myocyte-specific enhancer factor 2B
1tqe_Q3e-2123107282Myocyte-specific enhancer factor 2B
1tqe_R3e-2123107282Myocyte-specific enhancer factor 2B
1tqe_S3e-2123107282Myocyte-specific enhancer factor 2B
6c9l_A3e-2123107282Myocyte-specific enhancer factor 2B
6c9l_B3e-2123107282Myocyte-specific enhancer factor 2B
6c9l_C3e-2123107282Myocyte-specific enhancer factor 2B
6c9l_D3e-2123107282Myocyte-specific enhancer factor 2B
6c9l_E3e-2123107282Myocyte-specific enhancer factor 2B
6c9l_F3e-2123107282Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Interacts genetically with TT16/AGL32 in a partially antagonistic manner during flower development. Is essential for the coordination of cell divisions in ovule, seed coat development and endosperm formation (PubMed:27776173). {ECO:0000269|PubMed:27776173}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00093SELEXTransfer from AT3G58780Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021898389.11e-125agamous-like MADS-box protein AGL1 isoform X2
SwissprotP293811e-118AGL1_ARATH; Agamous-like MADS-box protein AGL1
TrEMBLA0A2C9WKC31e-121A0A2C9WKC3_MANES; Uncharacterized protein
TrEMBLQ9XHM31e-121Q9XHM3_LIQST; AGAMOUS homolog (Fragment)
STRINGevm.model.supercontig_50.731e-120(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.11e-120MIKC_MADS family protein
Publications ? help Back to Top
  1. Matalon O, et al.
    Dephosphorylation of the adaptor LAT and phospholipase C-γ by SHP-1 inhibits natural killer cell cytotoxicity.
    Sci Signal, 2016. 9(429): p. ra54
    [PMID:27221712]
  2. Ehlers K, et al.
    The MADS Box Genes ABS, SHP1, and SHP2 Are Essential for the Coordination of Cell Divisions in Ovule and Seed Coat Development and for Endosperm Formation in Arabidopsis thaliana.
    PLoS ONE, 2016. 11(10): p. e0165075
    [PMID:27776173]