PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0455s0006.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 525aa    MW: 58219 Da    PI: 4.7565
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0455s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.97e-48231782128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...............................kvkaeekewyf 60 
                          ppGfrFhPtdeelv +yLk+kv g++l+l ++i+e+d+yk++P dLp                                 +k++++ w+f
  Kalax.0455s0006.1.p  23 PPGFRFHPTDEELVLYYLKRKVCGRRLKL-DIIAETDVYKWDPVDLPGftcnygslrisnlqmallvgtyvmvtcvsfyVYKTRDRLWFF 111
                          8****************************.99***************5589********************999999876677999**** PP

                  NAM  61 FskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          Fs+rd+ky++g r+nrat++gyWkatgkd+ +++ +++ vglkktLvfykg ap+g++tdWvmhey+l
  Kalax.0455s0006.1.p 112 FSHRDRKYPNGARSNRATHHGYWKATGKDRLITC-NSRPVGLKKTLVFYKGCAPTGTRTDWVMHEYTL 178
                          **********************************.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-181971IPR003441NAC domain
PROSITE profilePS5100548.92622201IPR003441NAC domain
PfamPF023651.4E-2623178IPR003441NAC domain
SuperFamilySSF1019413.01E-35101201IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MKMPSSSSSG TCSSRGNKKQ VWPPGFRFHP TDEELVLYYL KRKVCGRRLK LDIIAETDVY  60
KWDPVDLPGF TCNYGSLRIS NLQMALLVGT YVMVTCVSFY VYKTRDRLWF FFSHRDRKYP  120
NGARSNRATH HGYWKATGKD RLITCNSRPV GLKKTLVFYK GCAPTGTRTD WVMHEYTLHE  180
EELKRCHVVG DSFALYKVYK KSGPGPKNGE QYGAPFKEED WDEEECTEVG FNTAEAGNFL  240
GPHNIPKADM VREGVNLIGS ADEIEGVWNS STESRALLQL QSADSFHQVV EAPDITSGPN  300
VNELNDFLAD GDFLEANDLL GPEPIPSGED NPLGNLWFDD TYDGLGEWDL FNDADASHPN  360
SVFNGVDGML NNFEYRFEPR LDDTSIVTSE MWGNEDLSRN GVSIVQPGSI IEENTSISTL  420
QDNQNQNGST SYPQNSVVSA LWAFVESIPT TPASASENIL FNQAPDNVSS FSRAQSGDIN  480
SLAAAGTIGP VRYNKSRSVI ILSVVGALCA MLWLLIARQT VPAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-442317816140Stress-induced transcription factor NAC1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.15e-90NAC domain containing protein 17