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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Kalax.0448s0033.1.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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| Family |
Whirly |
| Protein Properties |
Length: 248aa MW: 27845.4 Da PI: 9.5612 |
| Description |
Whirly family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Kalax.0448s0033.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Whirly | 117.9 | 7e-37 | 101 | 183 | 1 | 83 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaak 83
s+yk+kaal+v++++p+f+ +dsg+ k++++G++ l++a+a ++r+ydW++kq+f+ls+ ev+++++l++k+sceffhdp+++
Kalax.0448s0033.1.p 101 SIYKGKAALTVEPRAPEFSLMDSGAYKISKDGFVYLQFAPASGVRQYDWSRKQVFSLSVFEVGSIISLGPKDSCEFFHDPFKG 183
7*******************************************************************************987 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 248 aa
Download sequence Send
to blast |
MAYLRVFAPQ FAFRNPRTTP QLHVSSYESI ASVNFAQPVR TRATSHSGRT KPYLECMQSE 60
YFEPQRFSSS RRSMERFRSD EDGGGGGNAP SPSARVYVGY SIYKGKAALT VEPRAPEFSL 120
MDSGAYKISK DGFVYLQFAP ASGVRQYDWS RKQVFSLSVF EVGSIISLGP KDSCEFFHDP 180
FKGRRLLNVD ESIYIPINKA EFTVLVSAMR FILPYLLGWN AFANSIKPED SLRGNNANAS 240
VDFEWSR*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1l3a_A | 4e-73 | 95 | 246 | 37 | 219 | p24: plant transcriptional regulator PBF-2 |
| 1l3a_B | 4e-73 | 95 | 246 | 37 | 219 | p24: plant transcriptional regulator PBF-2 |
| 1l3a_C | 4e-73 | 95 | 246 | 37 | 219 | p24: plant transcriptional regulator PBF-2 |
| 1l3a_D | 4e-73 | 95 | 246 | 37 | 219 | p24: plant transcriptional regulator PBF-2 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Single-stranded DNA-binding protein that functions in both chloroplasts and nucleus. In chloroplasts, maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. In the nucleus, is recruited to a distal element upstream of the kinesin KP1 to mediate the transcriptional repression of KP1. Can bind double-stranded DNA in vivo. {ECO:0000269|PubMed:19666500, ECO:0000269|PubMed:19669906, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:21911368}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:19669906}. |
| Publications
? help Back to Top |
- Lepage É,Zampini É,Brisson N
Plastid genome instability leads to reactive oxygen species production and plastid-to-nucleus retrograde signaling in Arabidopsis.
Plant Physiol., 2013. 163(2): p. 867-81
[PMID:23969600] - Zampini É,Lepage É,Tremblay-Belzile S,Truche S,Brisson N
Organelle DNA rearrangement mapping reveals U-turn-like inversions as a major source of genomic instability in Arabidopsis and humans.
Genome Res., 2015. 25(5): p. 645-54
[PMID:25800675] - Karpinska B,Alomrani SO,Foyer CH
Inhibitor-induced oxidation of the nucleus and cytosol in Arabidopsis thaliana: implications for organelle to nucleus retrograde signalling.
Philos. Trans. R. Soc. Lond., B, Biol. Sci., 2018.
[PMID:28808105]
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