![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0446s0007.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | DBB | ||||||||
Protein Properties | Length: 210aa MW: 23288.6 Da PI: 7.1754 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.2 | 1.5e-07 | 4 | 33 | 5 | 34 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 +C+ +e ++lfC ++ lC++C ++ H Kalax.0446s0007.1.p 4 ICDVCEGAAAILFCAADEAALCQSCDDKVH 33 8******99*****************9998 PP | |||||||
2 | zf-B_box | 28.1 | 4.2e-09 | 54 | 92 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38 +C+ +e+ ++ ++Ce +++ lC +C + H g H+ Kalax.0446s0007.1.p 54 ARCDICENAPAFFYCEVDGTSLCLQCDMIVHVGgkrtHE 92 69**************************99966666776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 5.1E-7 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.968 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.28E-6 | 4 | 47 | No hit | No description |
Pfam | PF00643 | 3.5E-6 | 4 | 42 | IPR000315 | B-box-type zinc finger |
SuperFamily | SSF57845 | 9.61E-5 | 49 | 90 | No hit | No description |
SMART | SM00336 | 5.1E-10 | 51 | 96 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.485 | 51 | 96 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.6E-7 | 54 | 92 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.37E-7 | 55 | 93 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0070370 | Biological Process | cellular heat acclimation | ||||
GO:0071483 | Biological Process | cellular response to blue light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 210 aa Download sequence Send to blast |
MRSICDVCEG AAAILFCAAD EAALCQSCDD KVHMCNKLAS RHVRVRLAAP SAVARCDICE 60 NAPAFFYCEV DGTSLCLQCD MIVHVGGKRT HERYLILRQK VEFQGDKPGL LEDPASQPLE 120 TGESNEGPRN STRDNQQNHV SSPVPIIDSN GDSHVKRDTK MIDLNMKPQR IHKQASNNQV 180 TMFSLLFFHT SACSVKFSYL LLKLWPHQP* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015889651.1 | 1e-97 | B-box zinc finger protein 18-like isoform X1 | ||||
Swissprot | C0SVM5 | 6e-72 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A0A1Q3C734 | 9e-95 | A0A1Q3C734_CEPFO; Zf-B_box domain-containing protein | ||||
STRING | VIT_04s0023g03030.t01 | 7e-95 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38960.1 | 2e-74 | DBB family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0446s0007.1.p |