PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 378aa MW: 43247.3 Da PI: 5.7185

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0446s0004.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.7	6.5e-55	10	138	2	129
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 ppGfrFhPtdeelv +yLkkkv+++k++l +vi+++d+y++ePwdL++ ++e++ewyfFs++dkky+tg+r+nrat +g+Wkatg+ Kalax.0446s0004.1.p 10 PPGFRFHPTDEELVGYYLKKKVAAQKIDL-DVIRDIDLYRIEPWDLQEkcwIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGR 98 9**************************.9***********953543344677**************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 dk+v++ k++l+g++ktLvfykgrap+g+k+dW+mheyrle Kalax.0446s0004.1.p 99 DKAVYD-KRKLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 138 **.999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.92E-59	6	158	IPR003441	NAC domain
PROSITE profile	PS51005	58.774	9	158	IPR003441	NAC domain
Pfam	PF02365	1.5E-28	10	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MDQCVESCIP PGFRFHPTDE ELVGYYLKKK VAAQKIDLDV IRDIDLYRIE PWDLQEKCWI 60 GYEEQNEWYF FSHKDKKYPT GTRTNRATMA GFWKATGRDK AVYDKRKLIG MRKTLVFYKG 120 RAPNGQKSDW IMHEYRLETD ENGPPQEEGW VVCRTFKKRT TTSKPKSIIT GPAWDSSAFF 180 YDESGGSSSV IDSPLDYITM QKHQPLQSTS FLSQNFFCKQ ELELSENNPI ITNNSSLIKS 240 QNHQFVQLPQ LESPSLPVLK RPSSSLSLIS DDNDKNKKNE AYHISSSKVT DWRALDKFVA 300 SQLSQGDNYE IDHPGNQMIP AGFGTLQDEE AFQVTMQNGD KLVFNDGRND RLNNGFYLGS 360 NDRNPESDNT GICIFES*

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MDQCVESCIP PGFRFHPTDE ELVGYYLKKK VAAQKIDLDV IRDIDLYRIE PWDLQEKCWI  60
GYEEQNEWYF FSHKDKKYPT GTRTNRATMA GFWKATGRDK AVYDKRKLIG MRKTLVFYKG  120
RAPNGQKSDW IMHEYRLETD ENGPPQEEGW VVCRTFKKRT TTSKPKSIIT GPAWDSSAFF  180
YDESGGSSSV IDSPLDYITM QKHQPLQSTS FLSQNFFCKQ ELELSENNPI ITNNSSLIKS  240
QNHQFVQLPQ LESPSLPVLK RPSSSLSLIS DDNDKNKKNE AYHISSSKVT DWRALDKFVA  300
SQLSQGDNYE IDHPGNQMIP AGFGTLQDEE AFQVTMQNGD KLVFNDGRND RLNNGFYLGS  360
NDRNPESDNT GICIFES*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-50	2	164	10	171	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-50	2	164	10	171	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-50	2	164	10	171	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-50	2	164	10	171	NO APICAL MERISTEM PROTEIN
3swm_A	6e-50	2	164	13	174	NAC domain-containing protein 19
3swm_B	6e-50	2	164	13	174	NAC domain-containing protein 19
3swm_C	6e-50	2	164	13	174	NAC domain-containing protein 19
3swm_D	6e-50	2	164	13	174	NAC domain-containing protein 19
3swp_A	6e-50	2	164	13	174	NAC domain-containing protein 19
3swp_B	6e-50	2	164	13	174	NAC domain-containing protein 19
3swp_C	6e-50	2	164	13	174	NAC domain-containing protein 19
3swp_D	6e-50	2	164	13	174	NAC domain-containing protein 19
4dul_A	5e-50	2	164	10	171	NAC domain-containing protein 19
4dul_B	5e-50	2	164	10	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:25148240}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269\|PubMed:17581762, ECO:0000269\|PubMed:17722694}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028090380.1	1e-159	NAC domain-containing protein 37-like
Refseq	XP_028090381.1	1e-159	NAC domain-containing protein 37-like
Refseq	XP_028090382.1	1e-159	NAC domain-containing protein 37-like
Refseq	XP_028090383.1	1e-159	NAC domain-containing protein 37-like
Swissprot	Q9SL41	1e-137	NAC37_ARATH; NAC domain-containing protein 37
TrEMBL	A0A2K1ZMJ0	1e-154	A0A2K1ZMJ0_POPTR; NAC family protein
TrEMBL	E5KUH9	1e-154	E5KUH9_POPTR; Transcription factor
STRING	VIT_04s0023g03110.t01	1e-153	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18060.1	1e-134	vascular related NAC-domain protein 1

Link Out ? help Back to Top
Phytozome	Kalax.0446s0004.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Negi S,Tak H,Ganapathi TR Cloning and functional characterization of MusaVND1 using transgenic banana plants. Transgenic Res., 2015. 24(3): p. 571-85 [PMID:25523085] Tan TT, et al. Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation. Plant Physiol., 2018. 176(1): p. 773-789 [PMID:29133368]