PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0445s0023.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 348aa    MW: 39621 Da    PI: 8.7258
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0445s0023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.65.9e-50141431128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                          + pGfrFhPtdeelv +yL++kve+k+l++ e ik++d+yk++PwdLp ++v +++++wyfF+ r +ky+++ r+nr+t sg+Wkatg d
  Kalax.0445s0023.1.p  14 MLPGFRFHPTDEELVAFYLRRKVENKQLSI-ELIKQIDLYKYNPWDLPtASVGTNDQQWYFFCLRGRKYRNSVRPNRVTGSGFWKATGID 102
                          579***************************.89***************778899999********************************* PP

                  NAM  90 kevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          k+++s    +e +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  Kalax.0445s0023.1.p 103 KPIYSFkqPHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 143
                          ****96444556***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-5313179IPR003441NAC domain
PROSITE profilePS5100552.83314180IPR003441NAC domain
PfamPF023654.1E-2516143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MSTSDKKQDE DEVMLPGFRF HPTDEELVAF YLRRKVENKQ LSIELIKQID LYKYNPWDLP  60
TASVGTNDQQ WYFFCLRGRK YRNSVRPNRV TGSGFWKATG IDKPIYSFKQ PHECIGLKKS  120
LVYYRGSAGK GTKTDWMMHE FRLPPQRKNS AGQQQNSSLA KSSNITLEAE VWTLCRIFKR  180
VSSYKKYIPS THPQLQQLNF ASSVTDSSSK TCSNESDHNN DNGSSEFHVS IADHSHSHSS  240
YKSISSPPSI ALQQNHFATA ATTQTHHQLS LFTCSDAFDH HHRQQQRNSS DLRISNSASS  300
AGFWNASGDL MFAGDIFGGD WDELRSVVDP YAIDFSLPDR RLYYNCK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-481618619171NO APICAL MERISTEM PROTEIN
1ut4_B7e-481618619171NO APICAL MERISTEM PROTEIN
1ut7_A7e-481618619171NO APICAL MERISTEM PROTEIN
1ut7_B7e-481618619171NO APICAL MERISTEM PROTEIN
3swm_A1e-471618622174NAC domain-containing protein 19
3swm_B1e-471618622174NAC domain-containing protein 19
3swm_C1e-471618622174NAC domain-containing protein 19
3swm_D1e-471618622174NAC domain-containing protein 19
3swp_A1e-471618622174NAC domain-containing protein 19
3swp_B1e-471618622174NAC domain-containing protein 19
3swp_C1e-471618622174NAC domain-containing protein 19
3swp_D1e-471618622174NAC domain-containing protein 19
4dul_A7e-481618619171NAC domain-containing protein 19
4dul_B7e-481618619171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024450662.11e-111transcription factor JUNGBRUNNEN 1 isoform X2
SwissprotQ9SK554e-91NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A3N7FY661e-109A0A3N7FY66_POPTR; Uncharacterized protein
STRINGVIT_12s0028g00860.t011e-107(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.12e-84NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]