 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Kalax.0440s0017.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
| Family |
HSF |
| Protein Properties |
Length: 284aa MW: 32638.8 Da PI: 7.0625 |
| Description |
HSF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Kalax.0440s0017.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HSF_DNA-bind | 113.5 | 1.4e-35 | 45 | 136 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91
Fl k+y++++d+++++++swse+g +fvv+ ++efa+++Lp+yFkh+nf+SFvRQLn+YgFkk+ ++ weF+++ F+kg++
Kalax.0440s0017.1.p 45 FLIKTYQLVDDPTTDRVVSWSEDGATFVVWRPSEFARDLLPNYFKHNNFSSFVRQLNTYGFKKMVADR---------WEFANDFFRKGER 125
9****************************************************************999.........************* PP
XXXXXXXXXXX CS
HSF_DNA-bind 92 ellekikrkks 102
+ll++i+r+ks
Kalax.0440s0017.1.p 126 HLLSEIHRRKS 136
*********97 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042802 | Molecular Function | identical protein binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 284 aa
Download sequence Send
to blast |
MAPAMFLSSS EDEKLLQHYN STGFTLDTYI NALDQEQIKS APAPFLIKTY QLVDDPTTDR 60
VVSWSEDGAT FVVWRPSEFA RDLLPNYFKH NNFSSFVRQL NTYGFKKMVA DRWEFANDFF 120
RKGERHLLSE IHRRKSPHQS LQSHQQLYQE QENNHLFQCR SGWPVTDSCS PPLLLPTSSP 180
HLSKPGNDDN CDAVVMMSLS EDNQRLRRKN LMLLSELAHM KSLYNDIIYF IQNNVAPISP 240
PPTEQIPSCQ IKRGVGREEE QNGTVKLFGV SLSGRKRFHQ LDN*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1hks_A | 1e-21 | 40 | 134 | 2 | 106 | HEAT-SHOCK TRANSCRIPTION FACTOR |
| 1hkt_A | 1e-21 | 40 | 134 | 2 | 106 | HEAT-SHOCK TRANSCRIPTION FACTOR |
| 5d5u_B | 2e-21 | 45 | 134 | 29 | 129 | Heat shock factor protein 1 |
| 5d5v_B | 2e-21 | 45 | 134 | 29 | 129 | Heat shock factor protein 1 |
| 5d5v_D | 2e-21 | 45 | 134 | 29 | 129 | Heat shock factor protein 1 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
