PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0430s0022.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 838aa    MW: 92416.2 Da    PI: 6.7949
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0430s0022.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-182078357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Kalax.0430s0022.1.p 20 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 78
                         5679*****************************************************97 PP
2START166.42e-521643712204
                          HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS
                START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 
                          +aee+++e+++ka+ ++  Wv+++  ++g++++ +++ s+++ g a+ra+g+v  +++++ve+l d++  W +++++++++ v+ ++  g
  Kalax.0430s0022.1.p 164 IAEETLTEFISKATGTAIEWVQMPGVKPGPDSIGIIAISHGCAGVAARACGLVSLEPTRVVEILKDRP-SWFRDCRAVDVVSVLPTAngG 252
                          789*******************************************************9998888888.****************9999* PP

                          EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
                START  90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                          +++l +++l+a+++l+p Rdf+ +Ry+  +++g++v++++S+ ++q+ p+    +s+vRae+l Sg+li+p+++g+s +++v+hvdl+ r
  Kalax.0430s0022.1.p 253 TIELLYMQLYAPTTLAPaRDFWLIRYTSVMEDGSLVVCERSLKHTQNGPSmptVQSFVRAEMLSSGYLIRPCEGGGSIIHIVDHVDLEPR 342
                          *************************************************999889*********************************** PP

                          XXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                START 176 lphwllrslvksglaegaktwvatlqrqc 204
                           ++++lr+l++s ++ ++kt++a+l++++
  Kalax.0430s0022.1.p 343 RVPEVLRPLYESPTILAQKTTMAALRQLR 371
                          *************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-18978IPR009057Homeodomain-like
PROSITE profilePS5007115.5971579IPR001356Homeobox domain
SMARTSM003891.2E-151783IPR001356Homeobox domain
SuperFamilySSF466894.11E-171983IPR009057Homeodomain-like
CDDcd000869.29E-172080No hitNo description
PfamPF000462.9E-162178IPR001356Homeobox domain
CDDcd146861.10E-572111No hitNo description
PROSITE profilePS5084825.51154354IPR002913START domain
CDDcd088752.18E-73158374No hitNo description
Gene3DG3DSA:3.30.530.202.5E-21162369IPR023393START-like domain
SuperFamilySSF559614.67E-35163373No hitNo description
SMARTSM002345.0E-37163373IPR002913START domain
PfamPF018526.3E-50164371IPR002913START domain
PfamPF086701.4E-53694836IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    Send to blast
MPEMMSMSCK DGKHGVDNGK YVRYTPEQVE ALERLYHECP KPSSIRRQQL IRECPILSNI  60
EPKQIKVWFQ NRRCREKQRK EASRLQAVNR KLNALNKLLM EENDRLQKQV SQLVSENGYF  120
RQNNQKKKLA TKDTSCESVV TSGQHQLMPQ HPPRDASPAG LLSIAEETLT EFISKATGTA  180
IEWVQMPGVK PGPDSIGIIA ISHGCAGVAA RACGLVSLEP TRVVEILKDR PSWFRDCRAV  240
DVVSVLPTAN GGTIELLYMQ LYAPTTLAPA RDFWLIRYTS VMEDGSLVVC ERSLKHTQNG  300
PSMPTVQSFV RAEMLSSGYL IRPCEGGGSI IHIVDHVDLE PRRVPEVLRP LYESPTILAQ  360
KTTMAALRQL RQLAYEVSPP NATNWARRPA ALRALSHRLS RGFNEALNGF SDEGWIVMGN  420
DGMDDVTVLI NSSPNKLMGL NLSFGNGFSP VCNTVLCAKA SMLLQNVPPA ILLRFLREHR  480
SEWADNNIDA YSAAAIKVGP CNLPGIRVGG FGGQVILPLA HTIEHEELLE VIKLESVGHC  540
SEDTIMPRDM FLLQMCSGVD EHAVGTCSEL IFAPIDASFA DDAPLLPSGF RIIPLEPVKE  600
ASSPNRTLDL ASALETGTRT SSDCSSNYGS TRSVMTIAFE FACESHMQES VAAMARQYVR  660
SIISSVQRVA LALSPNLSST GSLLSPSRTP EAQTLTRWIC ASYRCSLGVE LLKASSESNE  720
SMLKTMWHHS DAIMCCSLKA MPVFTFANQA GLDMLETTLA ALQDMTLEKI FDEHGRKTLC  780
SELPQIMQQG FACLQGGICV SSMGRPISYE RAVAWKVLND EDNAHCICFM FVNWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021610318.10.0homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A2R6R0060.0A0A2R6R006_ACTCH; Homeobox-leucine zipper protein like
STRINGcassava4.1_001674m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]