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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0425s0019.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | bHLH | ||||||||
Protein Properties | Length: 498aa MW: 55629 Da PI: 5.1465 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.6 | 9.2e-13 | 299 | 345 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +ErrRR++++ +f Lr+l+P+ K++K++iL +++Y+k+L+ Kalax.0425s0019.1.p 299 NHVLAERRRREKLKRRFLVLRSLVPTT-----AKVDKISILDDTIKYLKELE 345 6899**********************6.....5****************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.323 | 295 | 344 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.8E-17 | 297 | 358 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.4E-17 | 299 | 359 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.3E-10 | 299 | 345 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.7E-14 | 301 | 350 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 498 aa Download sequence Send to blast |
MFFFSLWQTV ACFPVPGGVV ELGVTEKVFS VLLLNSGLLK LHHDKLKLCF LQVSEDAGLI 60 QRITDCLMDI STVSKRSDDV STQRPSNSTD RVTSALNILD TQLVVSPHTS TSDPFGLAEL 120 DDSFIVESIS EEAVLLQNWQ FMEDDDDLNQ YVHDPGNSAS KMTLVSAKVD RQSPLKPQEC 180 NQMKDTTTGD LLGDEMHYQS VISAILQTSV VGPHYGDTNK ASSFVSFRKE EFAGITKSAT 240 PQRILKKVLT QVPKMHSEGL LGPPEKDHKN VIQKGCDDTY LPEAEDLIDM DLPEETGLNH 300 VLAERRRREK LKRRFLVLRS LVPTTAKVDK ISILDDTIKY LKELERKIDE LESAKETAAN 360 TETTMVTKSA QDGTKETSSY NYEVEETHIA SKKRRKAFDT GGNNINRRAS SKRECNDDLV 420 VEVEDKDVRV EVRCGWREGL VPEVMEALSD LDLESTSVCT RSSDGILYLK ITSKAQGLKV 480 ASAKLIKQEM ERIVHNR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 303 | 308 | ERRRRE |
2 | 304 | 309 | RRRREK |
3 | 391 | 395 | KKRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41315.1 | 9e-47 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0425s0019.1.p |