PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0423s0006.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB_related

Protein Properties

Length: 846aa MW: 93962 Da PI: 4.4495

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0423s0006.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.1	5.4e-10	698	740	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +W++ + el++++++q+G++ +++I + ++ gRt+ q+k+++ k Kalax.0423s0006.1.p 698 ASWSKLDTELFYQGIRQFGTD-FALIQQLFP-GRTRHQIKLKYKK 740 58*****************.*****.*********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF15963	7.2E-28	690	774	No hit	No description
SuperFamily	SSF46689	6.28E-10	691	742	IPR009057	Homeodomain-like
PROSITE profile	PS51293	10.498	695	743	IPR017884	SANT domain
SMART	SM00717	4.1E-9	696	744	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.9E-6	697	740	IPR009057	Homeodomain-like
CDD	cd00167	2.56E-7	699	740	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 846 aa Download sequence Send to blast
MDFDDLDPFD DFLEVPTDAN GEAAKKFKPK SKPRPKPRSA AHTSVASQPQ KEKLLVSVPS 60 LPQESSSDAT HMGVASAAKS VGQPDSLNNV EEQHSGISLV QQVPVSPEPL SHLPRHDDGC 120 SKDAFHEELA ETRVDGSQTS LVEECPSKGL GQVAKDYEDV VTGGNRGLNC DYYEEPPVSG 180 GDGCQNFGVK QCPSRAESAS LQCNQFDDVD PEQSISTARD GGEFRPKLKS RPVKQTLSSA 240 KSGLTGTMNE NHVEISSDAF DSNRQENLGG ADVSGNNNIP EGSLQDRVPL DDSRRFEMEN 300 SSSINVVLDD LQFDVTTIES FRPQSRSSPD KSLNSSRDVF MGDRIIESYQ FDNREIPCSI 360 IMVDQGNPHS FVDQGSNTCD SSQAQSMFGV TGNQNEISIR DSTTSMITKP SDIDSGRMEP 420 EHRESIDNGS LYDPSISGFP LADDYFSINE PFTCGSEIGQ SGASLPDNGM HVEATHEIPV 480 ERVDDSAAPE GTGTRQPARV LRKRKARSTR PAESVDCETD SIHGELHSEF DRNQDEDYNE 540 GNTKQKKKGV QRSRKSAPES DQPNRSRKKV KDASSEQQEK PKKKFSHSTR GRRKRVDPTL 600 LATPDDEIDH RSCSFRDLIL RAEFLERDSK KVSTPSSAPA TNQRTESPSP WDQPYNERSN 660 FDSDQHGEYD DYEDDNIEVQ ESSSYFNYHS YMTKTPRASW SKLDTELFYQ GIRQFGTDFA 720 LIQQLFPGRT RHQIKLKYKK EERQHPQRVS EAIENRAKGI SYFQQVIEQL KATDTQADQE 780 LGEDPNEVED YADDVLEENA ELNDNGSTRL ELGDVVAKDD AEDTTEVSEK MDEDDDYGLG 840 SYVGL*

Sequence ? help Back to Top

Protein Sequence Length: 846 aa Download sequence Send to blast

MDFDDLDPFD DFLEVPTDAN GEAAKKFKPK SKPRPKPRSA AHTSVASQPQ KEKLLVSVPS  60
LPQESSSDAT HMGVASAAKS VGQPDSLNNV EEQHSGISLV QQVPVSPEPL SHLPRHDDGC  120
SKDAFHEELA ETRVDGSQTS LVEECPSKGL GQVAKDYEDV VTGGNRGLNC DYYEEPPVSG  180
GDGCQNFGVK QCPSRAESAS LQCNQFDDVD PEQSISTARD GGEFRPKLKS RPVKQTLSSA  240
KSGLTGTMNE NHVEISSDAF DSNRQENLGG ADVSGNNNIP EGSLQDRVPL DDSRRFEMEN  300
SSSINVVLDD LQFDVTTIES FRPQSRSSPD KSLNSSRDVF MGDRIIESYQ FDNREIPCSI  360
IMVDQGNPHS FVDQGSNTCD SSQAQSMFGV TGNQNEISIR DSTTSMITKP SDIDSGRMEP  420
EHRESIDNGS LYDPSISGFP LADDYFSINE PFTCGSEIGQ SGASLPDNGM HVEATHEIPV  480
ERVDDSAAPE GTGTRQPARV LRKRKARSTR PAESVDCETD SIHGELHSEF DRNQDEDYNE  540
GNTKQKKKGV QRSRKSAPES DQPNRSRKKV KDASSEQQEK PKKKFSHSTR GRRKRVDPTL  600
LATPDDEIDH RSCSFRDLIL RAEFLERDSK KVSTPSSAPA TNQRTESPSP WDQPYNERSN  660
FDSDQHGEYD DYEDDNIEVQ ESSSYFNYHS YMTKTPRASW SKLDTELFYQ GIRQFGTDFA  720
LIQQLFPGRT RHQIKLKYKK EERQHPQRVS EAIENRAKGI SYFQQVIEQL KATDTQADQE  780
LGEDPNEVED YADDVLEENA ELNDNGSTRL ELGDVVAKDD AEDTTEVSEK MDEDDDYGLG  840
SYVGL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	4e-38	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Kalax.0423s0006.1.p