PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0402s0001.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 622aa    MW: 69291.3 Da    PI: 6.745
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0402s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix96.62.3e-3070155187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW++qe+laL+++r++m+ ++r+++lk+plW++vs+km+e g++rs+k+Ckek+en+ k++k++++g++++ s+ ++t+++fd+lea
  Kalax.0402s0001.1.p  70 RWPRQETLALLKIRSDMDLAFRDSNLKGPLWDDVSRKMAELGYHRSAKKCKEKFENVYKYHKRTRDGRSSK-SDGKKTYRFFDELEA 155
                          8*********************************************************************8.66667*******985 PP
2trihelix94.51e-29428512186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          rW+k ev aLi++r++ e +++++  k+p Wee+s+ m+  g++r++k+Ckekwen+nk++kk+ke++k+r +++s+tcpy++ l+
  Kalax.0402s0001.1.p 428 RWPKAEVEALIKLRTSFEIKYQENGPKGPFWEEISAGMSNLGYNRNAKRCKEKWENINKYFKKVKESNKQR-PQASKTCPYYHLLD 512
                          8********************************************************************98.999********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0167129IPR001005SANT/Myb domain
PfamPF138371.5E-2069156No hitNo description
PROSITE profilePS500906.64470127IPR017877Myb-like domain
CDDcd122033.65E-2470134No hitNo description
PROSITE profilePS500907.224421485IPR017877Myb-like domain
SMARTSM007170.0017425487IPR001005SANT/Myb domain
CDDcd122031.38E-25427492No hitNo description
PfamPF138372.4E-21427514No hitNo description
Gene3DG3DSA:1.10.10.602.0E-4427484IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MLGGGGGGGG ASVAMLVSSC QESGGDKAAS HDPSNNCSLA GVFGEEEINN ARNGNSMEDG  60
DWNSGGSSHR WPRQETLALL KIRSDMDLAF RDSNLKGPLW DDVSRKMAEL GYHRSAKKCK  120
EKFENVYKYH KRTRDGRSSK SDGKKTYRFF DELEALDQLQ PFQVPPPVQQ RQQVSSHLKA  180
PPFPMQPPPA PLALQIPTAT TISFSQQLPC RNSDINNPIS TAAPITPAPT NPTTIISPHF  240
QSTATNFMLS TSSSTSSDDF QQRRRTEKKR KWKDFFEKLM RDVVDKQEEL QNKFLRTIEM  300
RERDRSMREE AWRMQEMARL NREHDILVQE RSAAAAKDAA IIAFLQKIAG QQQPQTQPPP  360
PQPKPQPPPH TIIQLDPSST PPPPQPQPQP QPQPQPKPLS VMKPDSNASG DQNNLTMVCG  420
STPPSSSRWP KAEVEALIKL RTSFEIKYQE NGPKGPFWEE ISAGMSNLGY NRNAKRCKEK  480
WENINKYFKK VKESNKQRPQ ASKTCPYYHL LDAIYKEKKG GGGDNDNFLP PPSANFSMEP  540
LMVQPEQQWP LAPQAQARHN EDEEQDDMLD EDELDQDMED EREDGKEENN GGTYEVVATA  600
SNKAQHGASA ATGSLGATAV A*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261270QRRRTEKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009618661.11e-166PREDICTED: trihelix transcription factor GTL1-like
RefseqXP_010314480.11e-166trihelix transcription factor GT-2-like
TrEMBLA0A1S3XDN41e-164A0A1S3XDN4_TOBAC; trihelix transcription factor GTL1-like
TrEMBLA0A3Q7JB431e-165A0A3Q7JB43_SOLLC; Uncharacterized protein
STRINGSolyc12g056510.1.11e-165(Solanum lycopersicum)
STRINGXP_009618661.11e-165(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-68Trihelix family protein