PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0401s0006.4.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family SBP
Protein Properties Length: 309aa    MW: 33937.2 Da    PI: 8.5548
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0401s0006.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.55e-4025101278
                          -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                  SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                          C v+gC a+ls++++yhrrhkvCe+hsk++ v++ g+eqrfCqqCsrfh+l efD++krsCr+rL++hn+rrrk+q+
  Kalax.0401s0006.4.p  25 CLVDGCVANLSKCRDYHRRHKVCEAHSKTSRVTIGGQEQRFCQQCSRFHSLAEFDDSKRSCRKRLDGHNRRRRKPQP 101
                          **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.4E-321786IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.4532299IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.67E-3823104IPR004333Transcription factor, SBP-box
PfamPF031106.0E-302598IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MDSSSSSGSY KRARAKSNTV QVPSCLVDGC VANLSKCRDY HRRHKVCEAH SKTSRVTIGG  60
QEQRFCQQCS RFHSLAEFDD SKRSCRKRLD GHNRRRRKPQ PDSLYLSSSK YISTHQGSKF  120
VSYGTQYFPN SAVAASSWND AAKAQNNHPY PSNSQLNFGA NNFPSCFSQG YSGEKQFPFL  180
QSADQSVHVS QPHLSITLED VTSSNSGHKL LSSDGFDRVI DSDRASSLLS SSHPETSRFT  240
PTQLVLCPTQ PSIPTHLYNG VATESTPAMD SPLLADSRSN NGNSSMDFSE IIQNGSDVCH  300
QTISFSWG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-2725981184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18198KRSCRKRLDGHNRRRRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012085714.11e-86squamosa promoter-binding-like protein 16 isoform X3
RefseqXP_020539135.11e-86squamosa promoter-binding-like protein 16 isoform X1
RefseqXP_020539136.11e-86squamosa promoter-binding-like protein 16 isoform X1
RefseqXP_020539137.11e-86squamosa promoter-binding-like protein 16 isoform X1
RefseqXP_020539138.12e-87squamosa promoter-binding-like protein 16 isoform X2
TrEMBLA0A385JHW41e-84A0A385JHW4_POPTO; Squamosa promoter-binding protein-like
TrEMBLB9GZN11e-84B9GZN1_POPTR; Uncharacterized protein
STRINGPOPTR_0003s16780.12e-85(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-49SBP family protein