PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0397s0011.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 345aa    MW: 38098.4 Da    PI: 7.8133
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0397s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.61.1e-151059250
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEEE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyeys 50
                         +i  +  r+ +f kR  g+ KK  ELS+LCd+++++ii++ s   l++++
  Kalax.0397s0011.1.p 10 FIATEKARKLSFKKRSDGLVKKTRELSILCDIDACLIIYGgSPMSLRTWP 59
                         6778889*******************************972557899997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.6E-16160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.535151IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-17170IPR002100Transcription factor, MADS-box
CDDcd002662.41E-19285No hitNo description
PRINTSPR004042.3E-8323IPR002100Transcription factor, MADS-box
PfamPF003196.3E-141049IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MGRGKLTMEF IATEKARKLS FKKRSDGLVK KTRELSILCD IDACLIIYGG SPMSLRTWPE  60
DPKKIDSVLR KCESKRNESS SKHMSLMDFF GNQTCKINEQ IVKTRREMAR AKFAKRIEFG  120
LEGMSVEELR VLAAAVERKT EAVASRIEAE KEKQRMSRGV GALDLVKLGD PQRLDSASQN  180
NLVVANEYHY NAQAYNDYLS ASAPATHHHS KFEKPEPLLP VDVYLPLPPI CDGRFLTQNN  240
YPTDDLMIPM ADYIPAMNGD GYPGGGASGF GQLQAEPHYF QPNLYGLGYP AGSCLAAQQQ  300
QSVLPNLLPG SCQGSNYFQS GDCCCASGEC YCNLFPWQPG KNNG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.18e-15M-type_MADS family protein