PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0397s0003.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TALE
Protein Properties Length: 647aa    MW: 70806.9 Da    PI: 8.5695
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0397s0003.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.41.4e-093714081954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Kalax.0397s0003.2.p 371 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 408
                          554459******************************88 PP
2BELL1131.6e-36236307172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          erqe+q+kk kL+ +l+eV++rY+qy++q+q+v++sF+++ag gsa+ Yt+lAl++iSr+FrcLkdai+ qi
  Kalax.0397s0003.2.p 236 ERQEIQMKKGKLVCMLDEVEQRYRQYHQQMQIVMASFQQAAGQGSARTYTALALRTISRQFRCLKDAIVTQI 307
                          79********************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.9E-56159305IPR006563POX domain
PfamPF075261.5E-46164304IPR006563POX domain
PROSITE profilePS5007112.195349412IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.2E-29351425IPR009057Homeodomain-like
CDDcd000866.96E-12352413No hitNo description
SMARTSM003895.3E-9352416IPR001356Homeobox domain
SuperFamilySSF466895.99E-17353419IPR009057Homeodomain-like
PfamPF059202.6E-18369408IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MAAYFNGGNS EIQAADGLQT LILMNPSYVN NQQHHQNPNN FIFVNPSMSP ATDQSQQLVG  60
IPLQQNHHQE AISALHGLIP RPHYNLWTPV DPSTATRETP RAQQGLSLSL SNSQQQQQQR  120
VDFVGPPSLA ISPSGSKDDG MVFGGTPSPA SVISNGPVSG MRSVLLSSKY LKATQQLLEE  180
IVNVGSATDS AKKKDAATSS SSKQAAIEAS SPEVAAAAAG DGENGGKKAA ELSTAERQEI  240
QMKKGKLVCM LDEVEQRYRQ YHQQMQIVMA SFQQAAGQGS ARTYTALALR TISRQFRCLK  300
DAIVTQIRAV NKSLGEEDTG SKEGGSRLKF VDHHLRQQRA LQQLGMVQHN AWRPQRGLPE  360
RSVSVLRAWL FEHFLHPYPK DSDKHMLAKQ TGLTRSQVSN WFINARVRLW KPMVEEMYSE  420
EVKEQENDGS PNKTGNTGNN AEASASKAPT DAYQNAAAKS DSGSPGRLRN KNTRFSLIGS  480
SELEGITQMS PKQQRINGQM RHPTGSFESN MEMKSSDARN EHVLMKFGLE RQTGDDYSLI  540
TAGQGNFVGG FGSYPVEDMG RFDTSQQYQP RFSGNGGVSL TLGLTDTPQS FIPNQNMRRM  600
DIGDTTEFGT ISTTPDPTHT TSTAYESINI QNPKRFAVQL LPDFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A5e-16358416563Homeobox protein Meis2
3k2a_B5e-16358416563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018809867.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_018809868.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_018809869.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_018809870.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_018809871.10.0PREDICTED: BEL1-like homeodomain protein 1
SwissprotQ9SJ561e-161BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLB2MV690.0B2MV69_9MAGN; BEL1
STRINGXP_007162972.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-130BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]