PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0394s0004.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 541aa    MW: 61438.4 Da    PI: 5.0516
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0394s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.83.4e-2960143187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW+++e+laLi++r++m+ ++r++++k+plW+evs+k+++ gf+rs+k+Ckek+en+ k+y+++ke  ++   ++ +t+++f+qlea
  Kalax.0394s0004.1.p  60 RWPHDETLALIKVRSDMDAAFRESSAKGPLWDEVSRKLAALGFNRSSKKCKEKFENIYKYYRRTKELGQR---PNGKTYRFFEQLEA 143
                          8*****************************************************************9997...45668*******85 PP
2trihelix101.37.7e-32360444186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          rW++ ev aLi +r+  + + +++  k+plWee+s++m++rg+ rs+k+Ckekwen+nk++k++++++kkr +e+s+tcpyf+ l+
  Kalax.0394s0004.1.p 360 RWPRGEVEALISVRSTFDMHCQENGPKGPLWEEISAAMKKRGYDRSAKRCKEKWENINKYFKRVRDSNKKR-PEDSRTCPYFHLLD 444
                          8*********************************************************************8.99*********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.20153117IPR017877Myb-like domain
SMARTSM007170.001257119IPR001005SANT/Myb domain
PfamPF138371.7E-2059144No hitNo description
CDDcd122032.89E-2559124No hitNo description
PROSITE profilePS500907.178353417IPR017877Myb-like domain
SMARTSM007170.016357419IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-4358416IPR009057Homeodomain-like
PfamPF138378.3E-23359446No hitNo description
CDDcd122032.25E-22359424No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MLEASSLSAP AAAQGLLVVD GAEEENAKGG GIDNQAMGVL DEDERVREFE EHDRNFAGNR  60
WPHDETLALI KVRSDMDAAF RESSAKGPLW DEVSRKLAAL GFNRSSKKCK EKFENIYKYY  120
RRTKELGQRP NGKTYRFFEQ LEAIDHYPQP LTAISPSVMN QLESADRSLW IPDTTVAINV  180
DPLNVCVNAG AECQVQNAGN NSGIGNNYAM NSSTWTNSRS KESEGKSRKA KNKRKFSEFF  240
DRLMMEVTVK QEELQRRCVE AIERYEFDRI KREEAWRVQE MARIRREHEM LEHERSIAAA  300
KDAAVIALLQ KFSQQEIPVQ FTENNPITVA PKEKSLKEVE KNTADVDKPD AVLQNNSSSR  360
WPRGEVEALI SVRSTFDMHC QENGPKGPLW EEISAAMKKR GYDRSAKRCK EKWENINKYF  420
KRVRDSNKKR PEDSRTCPYF HLLDNLYKQK AGNNINAKID GNSNVGSSGE NMNSSNLLAP  480
PVSYDMGQQQ NELARMVGSN MDPNLDESAD NEEEEEEEEA SEDGENYQVM MNSNQMAIVE  540
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021887620.11e-144trihelix transcription factor GT-2-like isoform X1
TrEMBLA0A1R3GCN91e-141A0A1R3GCN9_COCAP; Uncharacterized protein
STRINGevm.model.supercontig_2611.11e-143(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-109Trihelix family protein