PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0387s0021.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Trihelix

Protein Properties

Length: 272aa MW: 30266.1 Da PI: 6.3107

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0387s0021.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	32.7	2e-10	22	91	2	71
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 Wt l+L++ +e + ++ + ++W+ +s+++++ ++r+ qC+ kw++l +y +ik++e+++ Kalax.0387s0021.1.p 22 WTLTDSLTLVNEIAAVEAECLDALSYYQKWKIISDNCAALEVNRTLDQCRRKWDSLFAEYDRIKRWEGGG 91 788888888888888888888888999****************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.504	22	78	IPR017877	Myb-like domain
Pfam	PF13837	2.1E-8	45	92	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MPPKKKEESA SRRTRSQVAP GWTLTDSLTL VNEIAAVEAE CLDALSYYQK WKIISDNCAA 60 LEVNRTLDQC RRKWDSLFAE YDRIKRWEGG GDAYWGLARE RRRAVGLPED FDRDLFNAVD 120 VVVKAQVERA SSRPDAVLED ADADPLGVIS PPVFKKQSHQ LTPQKRQVEV KKEKKIADDR 180 QTGSADVMAT QPGEKDGSVE VTASQLREKA ELIQAILEGK LAENKDYTLG DLKQGPSSHI 240 NLARRQGDKL IDCFGVIAST LDQLCKATHT Q*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	1e-55	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Kalax.0387s0021.1.p