PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0386s0019.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 720aa MW: 78606.3 Da PI: 6.4179 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.6 | 4.9e-19 | 20 | 71 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++++q+++Le++F++++++++++r +L+++lgL rq+k+WFqNrR+++k Kalax.0386s0019.1.p 20 HRHSAHQIQRLEAVFKECPHLDEKQRLQLSRELGLAPRQIKFWFQNRRTQMK 71 6799*********************************************998 PP | |||||||
2 | START | 169 | 3.2e-53 | 228 | 449 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv...dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 e+a a+++lvk+ +a+ep+W+ks+ + +n++ +l +++ ++ea+r+sgvv m++ llv ++d + +W et+ +a Kalax.0386s0019.1.p 228 EIAANAMNDLVKLLQATEPLWTKSAtdgrDTLNYENYLMLSPRAMKkpnARTEASRDSGVVAMNSLLLVDMFMDAG-KWLETFSpivsAA 316 57889************************999999999887776557889**************************.************* PP EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS START 80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162 +t++v++ g g+l lm+ elq+lsplvp R+fvf+Ry++q ++g+wvivd+S d + + + +++lpSg+lie++sng s Kalax.0386s0019.1.p 317 KTIQVLTAGvsgslsGTLRLMYEELQVLSPLVPtREFVFLRYCQQTEKGSWVIVDISCDFANGNRH--VLPQSRRLPSGCLIEDMSNGIS 404 ***************************************************************975..6666777*************** PP EEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 163 kvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 kv wvehv+ ++ + + l+ l+ksg+a+ga +w+atlqr ce+ Kalax.0386s0019.1.p 405 KVSWVEHVEIQDDSQaDHLYGDLIKSGYAFGAERWLATLQRMCER 449 **********998888***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.69E-19 | 8 | 76 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-20 | 9 | 80 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.892 | 13 | 73 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.7E-18 | 14 | 77 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.07E-18 | 15 | 73 | No hit | No description |
Pfam | PF00046 | 1.4E-16 | 20 | 71 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 48 | 71 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 44.819 | 219 | 452 | IPR002913 | START domain |
SuperFamily | SSF55961 | 7.25E-34 | 220 | 451 | No hit | No description |
CDD | cd08875 | 4.79E-105 | 223 | 448 | No hit | No description |
SMART | SM00234 | 1.0E-45 | 228 | 449 | IPR002913 | START domain |
Pfam | PF01852 | 1.2E-45 | 228 | 449 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 3.7E-7 | 279 | 412 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.26E-17 | 472 | 697 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 720 aa Download sequence Send to blast |
MEQGSAGDDS DPQKRKKRFH RHSAHQIQRL EAVFKECPHL DEKQRLQLSR ELGLAPRQIK 60 FWFQNRRTQM KGQLERADNS ILKAENDKIR CSNIALREAL KNIMCPNCGS MRIGDDPYLD 120 EQQLHLENAH LKEELDRVSS IAAKYIGRPV SQFSTTQSSH ISLIELSLGS FGGQIIPSPS 180 LGGFGSHGIT GSSLELDILS GTSSSVPPTM EIQPGSTIND MHKTLMAEIA ANAMNDLVKL 240 LQATEPLWTK SATDGRDTLN YENYLMLSPR AMKKPNARTE ASRDSGVVAM NSLLLVDMFM 300 DAGKWLETFS PIVSAAKTIQ VLTAGVSGSL SGTLRLMYEE LQVLSPLVPT REFVFLRYCQ 360 QTEKGSWVIV DISCDFANGN RHVLPQSRRL PSGCLIEDMS NGISKVSWVE HVEIQDDSQA 420 DHLYGDLIKS GYAFGAERWL ATLQRMCERY ASLTASGTNI HDLDGVIPTF DGKANMMKLS 480 QRMVSNFCAT VSTSTNSQQC TTLAGSNESQ VRLTVRKTAT DPGQPNGLVL CAATSIWLPV 540 SPQNAFNFFR DVSMRPQWDV LSKGGAVQEV AHISCGSHPG NYISILRASD PSQNNMVILQ 600 ECCIDSWGSL IVYSPVEIPE INMAVSGGDP SCIPLLPSGF MISPDGRSEI AHLSEASSTS 660 SSRHSSMTKS SGSLITIGFQ ILAGSSPVAK LDMESVTTVN NLIGMTIHQI KAALDCPDS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017973835.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG11 | ||||
Swissprot | Q9FX31 | 0.0 | HDG11_ARATH; Homeobox-leucine zipper protein HDG11 | ||||
TrEMBL | A0A2N9ELU8 | 0.0 | A0A2N9ELU8_FAGSY; Uncharacterized protein | ||||
STRING | XP_010099679.1 | 0.0 | (Morus notabilis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0386s0019.1.p |