PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

Kalax.0385s0032.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 286aa MW: 31321.8 Da PI: 7.9813

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0385s0032.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32	2.2e-10	8	57	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRdr+N+ f++L + l ++ +K++K +iL+ A++ +k+L Kalax.0385s0032.1.p 8 RKVQKADREKLRRDRLNEQFAQLGSALDPD----RPKNDKGTILTDAIQLLKDL 57 5677889******************997....79*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.4E-13	6	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.786	7	57	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-13	7	80	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.7E-8	8	57	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.99E-7	8	61	No hit	No description
SMART	SM00353	2.2E-7	13	63	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MENSAAARKV QKADREKLRR DRLNEQFAQL GSALDPDRPK NDKGTILTDA IQLLKDLTAQ 60 VDKLKADYNE LTEESRELTQ EKNDLREEKA SLKSDIENLS LQYQQRMRAS FPWGAMDHSV 120 VMAPPPYPYP VPVPVPPGAM PIHPSMQPYP FFGNQNPGAV PNSFSAFMPH MATNAPTDQQ 180 HSGQCAASAV QPAAKSHVSN RQDGKHKSSK DVRDERSEDT NDVATELELK TPGSKSDQGS 240 VSMPRKSKKQ SRKESSIPGE SCSSRCSSRQ DSSTNSVACG AKPDS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021686275.1	1e-118	transcription factor bHLH121 isoform X1
Refseq	XP_021686276.1	1e-118	transcription factor bHLH121 isoform X2
Swissprot	Q9LT23	6e-87	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A2P5ED01	1e-116	A0A2P5ED01_TREOI; Basic helix-loop-helix transcription factor
STRING	EOX97758	1e-116	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	4e-80	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kalax.0385s0032.1.p

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]