PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0382s0039.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 408aa MW: 44416.7 Da PI: 9.0939

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0382s0039.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.6	4.7e-05	169	191	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cg+ F+ ++ L+ H + H Kalax.0382s0039.1.p 169 SCHKCGEKFTKWEALEAHHLSrH 191 8*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	168	191	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	5.28E-23	193	406	No hit	No description
Gene3D	G3DSA:3.90.228.10	2.9E-12	202	386	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MPTTPWLSSI KKSLQCKTDP LDVHDPKART THLRAIATKR PSTKSGCSRT ISNLRDVIHG 60 SKRHVEKPVS CSPRSIQSSE FLNPIAHEVI LSGSGCELKI SGYGGDQDHH KDQNSTNGGA 120 TVGKSVSRRQ NLFELVKAGG DADTGSRIGP KSNRRRPAEM RLDENGGCSC HKCGEKFTKW 180 EALEAHHLSR HAVTELVEGD SSRKIVEIIC RTSWLKSEDS CGRIEKIFKI HNMSKTLAQF 240 EEYRELIKAN ASKLPKKHPR CLADGNELLR FHGTTVACSL GQNGCTTLCV SDKCSICRII 300 RNGFSIKKEL NGGIGVFTAS TSGRALQSVE KAEGDNSEES SVRKALVICR VIAGRVHKPL 360 ENIQDIAGQS GFDSLAGKGA DLSSNMEDLY LLNPKALLPC FVIICKS*

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MPTTPWLSSI KKSLQCKTDP LDVHDPKART THLRAIATKR PSTKSGCSRT ISNLRDVIHG  60
SKRHVEKPVS CSPRSIQSSE FLNPIAHEVI LSGSGCELKI SGYGGDQDHH KDQNSTNGGA  120
TVGKSVSRRQ NLFELVKAGG DADTGSRIGP KSNRRRPAEM RLDENGGCSC HKCGEKFTKW  180
EALEAHHLSR HAVTELVEGD SSRKIVEIIC RTSWLKSEDS CGRIEKIFKI HNMSKTLAQF  240
EEYRELIKAN ASKLPKKHPR CLADGNELLR FHGTTVACSL GQNGCTTLCV SDKCSICRII  300
RNGFSIKKEL NGGIGVFTAS TSGRALQSVE KAEGDNSEES SVRKALVICR VIAGRVHKPL  360
ENIQDIAGQS GFDSLAGKGA DLSSNMEDLY LLNPKALLPC FVIICKS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021606656.1	0.0	uncharacterized protein LOC110610892
TrEMBL	A0A2C9W6P3	1e-180	A0A2C9W6P3_MANES; Uncharacterized protein
STRING	cassava4.1_008244m	1e-180	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-153	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Kalax.0382s0039.1.p