PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0377s0050.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 306aa MW: 33557.4 Da PI: 5.8587

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0377s0050.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.8	1.2e-10	228	268	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ +L+ l+P+ +K++ +++Le+Av+Y+k Lq Kalax.0377s0050.1.p 228 RKRRERINERLKTLQGLVPNG-----TKVDISTMLEEAVQYVKFLQ 268 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.377	218	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-14	218	283	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-12	223	280	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-11	224	273	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.02E-12	227	272	No hit	No description
Pfam	PF00010	4.0E-8	228	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MEQLGGISAM YEGEWSCLSK MYNTTEESDF MAQLLGGFNP PPFAQTLGNA TRNFIDDNGG 60 FADPADDSAS SSFQLTQETS IFFPVCGEDD GEAECGANLS LSVASHPKTP EIKPVSDSAE 120 DKYVASSIKR AGKKSRNAED VSLWYVRCFV GQATDRRNVK PRKTRKSDSR SEVDKDGATN 180 NSQSSSLTCS ETGESSFSHK KSQTALNLNG RTRAGRGSAT DPQSLYARKR RERINERLKT 240 LQGLVPNGTK VDISTMLEEA VQYVKFLQLQ IKLLSSDEMW MYAPLAYNGM EIGLFDAKNV 300 HVPPR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14760.1	5e-55	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kalax.0377s0050.1.p