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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0376s0019.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | Trihelix | ||||||||
Protein Properties | Length: 581aa MW: 66559.8 Da PI: 6.9571 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 92.9 | 3.1e-29 | 120 | 205 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++++++++++k+plW+e+s+ m e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f qlea Kalax.0376s0019.1.p 120 RWPRQETLTLLEIRSRLDKKFKEANQKGPLWDEISRIMsDEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFGQLEA 205 8*************************************99******************************98..55567******985 PP | |||||||
2 | trihelix | 43.4 | 8.7e-14 | 421 | 488 | 1 | 61 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkry 61 +Wt++e+ +L+e+r +me+++++ + ++ lWee++++m++ g ++s+ +Ck+kwe +n + Kalax.0376s0019.1.p 421 QWTESEITKLVEIRASMESKFEQYSgqcnnwgQEIVLWEEIANRMASLGSNKSSLMCKNKWEGINSYL 488 7*********************8544567788********************************9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.034 | 117 | 180 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 4.8E-20 | 119 | 206 | No hit | No description |
CDD | cd12203 | 1.23E-21 | 120 | 185 | No hit | No description |
PROSITE profile | PS50090 | 6.876 | 120 | 178 | IPR017877 | Myb-like domain |
PROSITE profile | PS50090 | 6.574 | 414 | 485 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0084 | 418 | 487 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 3.35E-15 | 420 | 487 | No hit | No description |
Pfam | PF13837 | 2.3E-8 | 420 | 487 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 581 aa Download sequence Send to blast |
MEENHHHHHQ QHHQYEVVVP DFGLTPTPCY PSHPMQPAEI GYDRNPNPAA HHFDALMMAH 60 HHQNFQQLLL EESDHQLHSQ HHEIMMNRNN NNNGSSTSGG GFAADNTEAN ICDGGSGGVR 120 WPRQETLTLL EIRSRLDKKF KEANQKGPLW DEISRIMSDE HGYQRSGKKC REKFENLYKY 180 YKKTKEGKAG RQDGKHYRFF GQLEALYGEN KTNTAPLLPL HEGSHFSERN CFEHMKNSTP 240 SYTNHPNTLQ LCSNANYNSG GHHNFGSLSL SCNSSEFDSA SSSEDYNGLC GTGVCEIGSN 300 EKKEMKKRRN RRNWRAKIKD FIDSQMRSLI EKQEAWLAKT MTTIEQTEKE RLVREEEWKK 360 KEVERMNRER MFWAGERQWI EARDANLMEA LRKYNLGDVL GAFNSTHVMH VDHNESKHCN 420 QWTESEITKL VEIRASMESK FEQYSGQCNN WGQEIVLWEE IANRMASLGS NKSSLMCKNK 480 WEGINSYLVS RKKDDFYYKK QKGDVSRSLS GCYGTGDHGQ VEGIPIFGGT VSDQAAHNVS 540 SVPSSSVSAV NNNNIVPQES FFQFLMVDHE GSENLWGNNL * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | cassava4.1_005544m | 1e-125 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03680.1 | 2e-79 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0376s0019.1.p |