PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0370s0002.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 556aa    MW: 60672.4 Da    PI: 8.5526
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0370s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000167393323
                         ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                         C++C+k F r  nL+ H r H
  Kalax.0370s0002.1.p 73 CEICNKGFQRDQNLQLHRRGH 93
                         *******************88 PP
2zf-C2H211.50.00091148170123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC++C+k +  ks+ k H + +
  Kalax.0370s0002.1.p 148 WKCEKCPKKYAVKSDWKAHSKIC 170
                          58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.23E-77093No hitNo description
Gene3DG3DSA:3.30.160.602.6E-57093IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8247193IPR007087Zinc finger, C2H2
SMARTSM003550.117193IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
SMARTSM00355110113143IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.0E-4136169IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.23E-7143168No hitNo description
SMARTSM0035561148175IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MMSQGLSPVP SSILGFIEDQ IQNPDSSNTP ATQPSASSSA LKRKRNLPGT PDPDSEVVAL  60
SPTSLMATNR FLCEICNKGF QRDQNLQLHR RGHNLPWKLK QRSNKEVVKK KVYICPEKSC  120
VHHDPSRALG DLTGIKKHFS RKHGEKKWKC EKCPKKYAVK SDWKAHSKIC GTKEHKCDCG  180
TLFSRKDSFI THRAFCTAVV DQSGSRFASS VAAGTNNPLS LRNDFLSGNL GIPQGVDTNQ  240
FSVGGFYPEL STSSFHSYGH VSNNTDGSKS ISRHIIPQWL DQHPALNASA HLLMGNLAGN  300
LSHELLLQNA GQVNLFGSSS SSQAPWLNKC TDQSAFGSGN LSSLDQILGN TSGGSSGMMQ  360
VKREDEILSN ADFVENMTTS LYNPNNLSHQ QQQQQAITSN QSAAEQFLSS FYGRNNSNSL  420
GLISSGASNG QVSFAGNNNN GFVDNNSFCI ISRPPPPVIK DSDNTNASLN HHHHHQMLLH  480
EAVAAGRAKP PETNPNAIKQ QQAESSQTRD FLGVGRNEIM REEQFQLAMV SDQQFGSAAA  540
GAESDMSHYN QQWKH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-30144209367Zinc finger protein JACKDAW
5b3h_F8e-30144209367Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015866596.11e-124protein indeterminate-domain 9-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-96C2H2-like zinc finger protein