PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Binding Motif |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0368s0029.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

SBP

Protein Properties

Length: 1047aa MW: 115253 Da PI: 7.6644

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0368s0029.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	126.9	8e-40	125	202	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C +dls ak+yhrrhkvCe+hska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ Kalax.0368s0029.1.p 125 TCQVDSCMVDLSIAKDYHRRHKVCEAHSKATQALVGKQMQRFCQQCSRFHVLSEFDEGKRSCRRRLAGHNRRRRKTQT 202 6**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.4E-32	118	187	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.573	123	200	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.09E-36	124	204	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	8.9E-29	126	199	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	3.1E-5	827	941	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	8.86E-6	828	931	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.01E-4	834	941	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042742	Biological Process	defense response to bacterium
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1047 aa Download sequence Send to blast
MARKRDLPYQ QQELMIDRPR HPSGGLNNSR DYWNSNRWNW DCTRFVAQQV DGDAMNLDTP 60 VQSIQNKINI NQVAVEDDGS LCLKLGSGSG GSSSSDEPAL RPSKRVAGGS NARSPGGSGN 120 GNHPTCQVDS CMVDLSIAKD YHRRHKVCEA HSKATQALVG KQMQRFCQQC SRFHVLSEFD 180 EGKRSCRRRL AGHNRRRRKT QTDDVTSRLW SAGGQENAVN TGLDLVSLLT ALARAQGNQD 240 NANCVQVSVP GKEQLIQLIS KINSFSPPSD AATKLPVSDK LEKTNVEASP EHQSGSSANS 300 SSQSTLNLLG VLPLASPVSA PDAFTAPSQR SSHSSDREKT KSADTYQPDP RVLRKRTILD 360 FSSVGGERSC NSSHYHAEDS NSHVHDAQVN LPLQLFFSSP EDNNSPPKMA DSSKYFSSDS 420 SNQNEERSPS CSPGVQLFPV KPSKLTLNND RIPNGLNAKT QAGKSPCGTV SFDLFGGSKK 480 GVEVYFCEGS PNQVGYASPV SAYSPSSSTC GAQDLTGRIL FKLFDKDPSH LPVTLRSEIL 540 AWLSNSPSQM ESYIRPGCVV LSVYVSMPSS SWEQLEENLL EQVSRLLQRT DIDIWRDGRF 600 LVQTGKQLAS HNNGKLRLCK SWITPKAPEL VSVSPLAIIG GHETRVHLRG RNLNCRTKIH 660 CTYMGGYITK DICNTTVHDS TCDGTRLCGC EILIAAPSGT GRCFIEVDNG FKGNSHPIII 720 ADSTICEELR QLEFEFETDP KLNDNMSEVQ ESDLLWPKVE VLHFLNELGW LFQTKDSSNT 780 LEYSIYRFKF LLIFSVEKDF FVLVKKLLDI FVEEKLGGKI PMEVSEMVSG IQLLHRAVKR 840 RCRTMVDMLV NYSIVSRDPK LSKIYVFPPN CTGPGGLTPL HIAACTSGLE DVVDALTNDP 900 TELGLCCWES QLDESGQSPY AYATLRNNLS YNRLVAQKLA DRRNNQISLS VEVNETMEQA 960 WVEPSPAGSH VTKHKAASCS QCAAVVARCS NGRRVPGSHG MVGRPFILSM LAVTAVCVCV 1020 CLYFRGYPYT GMVSPFTWEK LDYATI*

Sequence ? help Back to Top

Protein Sequence Length: 1047 aa Download sequence Send to blast

MARKRDLPYQ QQELMIDRPR HPSGGLNNSR DYWNSNRWNW DCTRFVAQQV DGDAMNLDTP  60
VQSIQNKINI NQVAVEDDGS LCLKLGSGSG GSSSSDEPAL RPSKRVAGGS NARSPGGSGN  120
GNHPTCQVDS CMVDLSIAKD YHRRHKVCEA HSKATQALVG KQMQRFCQQC SRFHVLSEFD  180
EGKRSCRRRL AGHNRRRRKT QTDDVTSRLW SAGGQENAVN TGLDLVSLLT ALARAQGNQD  240
NANCVQVSVP GKEQLIQLIS KINSFSPPSD AATKLPVSDK LEKTNVEASP EHQSGSSANS  300
SSQSTLNLLG VLPLASPVSA PDAFTAPSQR SSHSSDREKT KSADTYQPDP RVLRKRTILD  360
FSSVGGERSC NSSHYHAEDS NSHVHDAQVN LPLQLFFSSP EDNNSPPKMA DSSKYFSSDS  420
SNQNEERSPS CSPGVQLFPV KPSKLTLNND RIPNGLNAKT QAGKSPCGTV SFDLFGGSKK  480
GVEVYFCEGS PNQVGYASPV SAYSPSSSTC GAQDLTGRIL FKLFDKDPSH LPVTLRSEIL  540
AWLSNSPSQM ESYIRPGCVV LSVYVSMPSS SWEQLEENLL EQVSRLLQRT DIDIWRDGRF  600
LVQTGKQLAS HNNGKLRLCK SWITPKAPEL VSVSPLAIIG GHETRVHLRG RNLNCRTKIH  660
CTYMGGYITK DICNTTVHDS TCDGTRLCGC EILIAAPSGT GRCFIEVDNG FKGNSHPIII  720
ADSTICEELR QLEFEFETDP KLNDNMSEVQ ESDLLWPKVE VLHFLNELGW LFQTKDSSNT  780
LEYSIYRFKF LLIFSVEKDF FVLVKKLLDI FVEEKLGGKI PMEVSEMVSG IQLLHRAVKR  840
RCRTMVDMLV NYSIVSRDPK LSKIYVFPPN CTGPGGLTPL HIAACTSGLE DVVDALTNDP  900
TELGLCCWES QLDESGQSPY AYATLRNNLS YNRLVAQKLA DRRNNQISLS VEVNETMEQA  960
WVEPSPAGSH VTKHKAASCS QCAAVVARCS NGRRVPGSHG MVGRPFILSM LAVTAVCVCV  1020
CLYFRGYPYT GMVSPFTWEK LDYATI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-29	116	199	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	835	840	RAVKRR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00155	DAP	Transfer from AT1G20980	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002273784.1	0.0	PREDICTED: squamosa promoter-binding-like protein 14
TrEMBL	F6I6X1	0.0	F6I6X1_VITVI; Uncharacterized protein
STRING	VIT_18s0122g00380.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	squamosa promoter binding protein-like 14

Link Out ? help Back to Top
Phytozome	Kalax.0368s0029.1.p