PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0367s0017.6.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 243aa MW: 26836.9 Da PI: 5.7944

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0367s0017.6.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00044	97	119	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Kalax.0367s0017.6.p 97 FSCNYCRRKFFSSQALGGHQNAH 119 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.79E-6	95	125	No hit	No description
PROSITE profile	PS50157	11.302	97	124	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	99	119	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MDLNRMAMMR NSDSEDDSEV NILVGSNLSI QGGYFECRDS IRDESSCLRN SHLNSEAISL 60 NLTLHSNAST PVDTDGSDPG AELTTQPPQV PRIQRLFSCN YCRRKFFSSQ ALGGHQNAHK 120 RERTMAKRAM KMGVFSQRYA SLVSLPMHGN AFRAMGLEAH ALTHPTLEPQ PPPRADENSI 180 RKFEHGGYFG VPFFPEDDAV ELPWPGSFRP HDDSNNADFA AMAPPMSNSA SPIPDDDLTL 240 RL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019176791.1	4e-64	PREDICTED: zinc finger protein 4-like
TrEMBL	A0A061E8M6	3e-59	A0A061E8M6_THECC; Zinc finger protein 4
STRING	EOY01311	4e-60	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	1e-36	zinc finger protein 4

Link Out ? help Back to Top
Phytozome	Kalax.0367s0017.6.p