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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0365s0016.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | bHLH | ||||||||
Protein Properties | Length: 433aa MW: 47263.4 Da PI: 6.4542 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32 | 2.2e-10 | 272 | 320 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + +k Ka +L + ++Y++sLq Kalax.0365s0016.1.p 272 NSHSLAERVRREKISERMKLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 320 58**************************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.06E-11 | 267 | 324 | No hit | No description |
SuperFamily | SSF47459 | 5.5E-17 | 267 | 336 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.586 | 269 | 319 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.1E-17 | 270 | 337 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-7 | 272 | 320 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-10 | 275 | 325 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MGGDADDGKV DLGFQQNSNK STMSCSTSGM NTNPLPNKVS GIAMSSIPMF KSSAGSDPHF 60 GTHWDPLLAI HQNENFGGGS SMVSHCGYAN PPYPIDNQGM SGTHLLQYPS SDSTLVDLPK 120 IQRFGSGNFV DMAGLYGLPA LGATASSSCY QNYLSNHEVG IHRHSTDRAG SQDDCQVSEE 180 RALEASPNGK RRRSVESASA LNSNKMTEGE QQKDMSEGSF DQPSEQDDEK QNQIRRLQSK 240 QSGKQAKDNS QTEDGTKDTY IHVRARRGQA TNSHSLAERV RREKISERMK LLQELVPGCN 300 KITGKAVMLD EIINYVQSLQ QQVEFLSMKL ATVNPELNID LERMLSKDIL HSRGDNPVML 360 GISPGIRSSH PYPHAMLQSG MQGIPNSSAQ YHHMPQNSWN NEFQSLLQMG FSSNPAVDNL 420 GQDGCGKPSL RD* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00135 | DAP | Transfer from AT1G10120 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021828015.1 | 1e-164 | transcription factor bHLH74 isoform X2 | ||||
Refseq | XP_023872654.1 | 1e-164 | transcription factor bHLH74 | ||||
TrEMBL | A0A251RBG4 | 1e-162 | A0A251RBG4_PRUPE; Uncharacterized protein | ||||
STRING | XP_008357997.1 | 1e-162 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10120.1 | 2e-82 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0365s0016.1.p |